Browse Element(s) Details


Os.20531.1.S1_at

Description gb:AF403129.1
DB_XREF= gi:22086628
GEN=RLK10
TID=Os.20531.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.20531 (NCBI UniGene Cluster)
DEF=Oryza sativa S-locus receptor-like kinase RLK10 (RLK10) mRNA, complete cds.
PROD=S-locus receptor-like kinase RLK10
FL= gb:AF403129.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5401010/11Protein kinase domain containing protein, expressed
LOC_Os04g540205/11receptor-like kinase, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g53990Os.25006.1.A1_at11/114+31947661..31950512expressed protein
LOC_Os04g53994Os.57529.1.S1_at11/114+31954508..31958289D-mannose binding lectin family protein, expressed
LOC_Os04g53998Os.49500.1.S1_at11/114+31959768..31963106D-mannose binding lectin family protein, expressed
LOC_Os04g54002Os.20532.1.S1_at10/114+31970352..31974125D-mannose binding lectin family protein, expressed
LOC_Os04g54010Os.20531.1.S1_at10/114+31974718..31977883Protein kinase domain containing protein, expressed
LOC_Os04g54010OsAffx.30180.4.S1_x_at1/114+31974718..31977883Protein kinase domain containing protein, expressed
LOC_Os04g54020Os.20531.1.S1_at5/114+31978528..31983657receptor-like kinase, putative
LOC_Os04g54020OsAffx.14405.1.S1_at1/114+31978528..31983657receptor-like kinase, putative
LOC_Os04g54020OsAffx.30180.4.S1_x_at1/114+31978528..31983657receptor-like kinase, putative
LOC_Os04g54030OsAffx.26594.1.S1_at11/114+31986455..31986739hypothetical protein
LOC_Os04g54040NANA4+31987597..31988546hypothetical protein
LOC_Os04g54050OsAffx.16205.1.S1_at2/114+31989841..31994321hypothetical protein
LOC_Os04g54050Os.49232.1.S1_x_at1/114+31989841..31994321hypothetical protein
LOC_Os04g54050Os.45982.1.A1_at1/114+31989841..31994321hypothetical protein
LOC_Os04g54050OsAffx.18764.1.S1_at1/114+31989841..31994321hypothetical protein
LOC_Os04g54050OsAffx.23640.3.S1_x_at1/114+31989841..31994321hypothetical protein
LOC_Os04g54060Os.35344.18.S1_x_at11/114+31995770..32001816transposon protein, putative, Mutator sub-class
LOC_Os04g54060Os.35344.3.S1_x_at9/114+31995770..32001816transposon protein, putative, Mutator sub-class
LOC_Os04g54060OsAffx.22940.5.S1_x_at3/114+31995770..32001816transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0016020cellular_componentmembrane
GO:0004672molecular_functionprotein kinase activity
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0004675molecular_functiontransmembrane receptor protein serine/threonine kinase activity
GO:0005529molecular_functionsugar binding
GO:0016301molecular_functionkinase activity
GO:0019199molecular_functiontransmembrane receptor protein kinase activity
GO:0030246molecular_functioncarbohydrate binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.20531.1.S1_at--960--6431Chr04:31975240..31975264 (25 bp)
GATCAGCTCAACTCATCTTATAATG
LOC_Os04g54010
Os.20531.1.S1_at--160--10231Chr04:31975057..31975081 (25 bp)
TATTCTGGAGTGCTATTCGCTTAAT
LOC_Os04g54010
Os.20531.1.S1_at--961--572Chr04:31978716..31978740 (25 bp)
ATCCATGTAGGACTGTTATGCGTTC
LOC_Os04g54020
Os.20531.1.S1_at--90--10132Chr04:31978700..31978724 (25 bp)
TATGCGTTCAGGAAGACCCAAATGC
LOC_Os04g54020
Os.20531.1.S1_at--1084--5232Chr04:31978639..31978663 (25 bp)
GAATGAAGCCACAACACTTCCTACT
LOC_Os04g54020
Os.20531.1.S1_at--809--10671Chr04:31974923..31974947 (25 bp)
TTCCTACTTCTAAGCAACCTGCATA
LOC_Os04g54010
Os.20531.1.S1_at--191--6032Chr04:31978562..31978586 (25 bp)
GAGAGGATGCCAACAAGTCTGTGAA
LOC_Os04g54020
Os.20531.1.S1_at--567--1032Chr04:31978530..31978554 (25 bp)
AGTCTTACCACACTACAAGGACGTT
LOC_Os04g54020
Os.20531.1.S1_at--1132--10171Chr04:31974788..31974812 (25 bp)
TATAGCTGGCTGTAGAATTCACCAC
LOC_Os04g54010
Os.20531.1.S1_at--836--5212Chr04:31978474..31978498 (25 bp)
GAATTCACCACTTGATCAATTGTGC
NONE
Os.20531.1.S1_at--137--6931Chr04:31974718..31974742 (25 bp)
GTATGGTTCATCTTCAATGGTTTAC
NONE
Target Sequence 
GATCAGCTCAACTCATCTTATAATGGATTTTCCAAACCTTATAGCCTGTGCATGGAGCTTGTGGAAAGATGGAAAGGCAG
AGAAATTTGTGGACTCAATTATTCTGGAGTGCTATTCGCTTAATGAGTTTTTGCTCTGTATCCATGTAGGACTGTTATGC
GTTCAGGAAGACCCAAATGCTAGACCACTCATGTCATCAGTTGTGGCCATGTTCGAGAATGAAGCCACAACACTTCCTAC
TTCTAAGCAACCTGCATATTTTGTGCCAAGGAATTGCATGGCAGAAGGGGCAAGAGAGGATGCCAACAAGTCTGTGAACA
GTATAAGTCTTACCACACTACAAGGACGTTAGATGTTTAAATTTCAGATATAGCTGGCTGTAGAATTCACCACTTGATCA
ATTGTGCAAGAACCTAGGAATATGANNGNNTTGTGGGTGTATGGTTCATCTTCAATGGTTTAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.20531.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis