Browse Element(s) Details


OsAffx.26594.1.S1_at

Description tigr:9632.m05248
TID=OsAffx.26594.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5403011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g53998Os.49500.1.S1_at11/114+31959768..31963106D-mannose binding lectin family protein, expressed
LOC_Os04g54002Os.20532.1.S1_at10/114+31970352..31974125D-mannose binding lectin family protein, expressed
LOC_Os04g54010Os.20531.1.S1_at10/114+31974718..31977883Protein kinase domain containing protein, expressed
LOC_Os04g54010OsAffx.30180.4.S1_x_at1/114+31974718..31977883Protein kinase domain containing protein, expressed
LOC_Os04g54020Os.20531.1.S1_at5/114+31978528..31983657receptor-like kinase, putative
LOC_Os04g54020OsAffx.14405.1.S1_at1/114+31978528..31983657receptor-like kinase, putative
LOC_Os04g54020OsAffx.30180.4.S1_x_at1/114+31978528..31983657receptor-like kinase, putative
LOC_Os04g54030OsAffx.26594.1.S1_at11/114+31986455..31986739hypothetical protein
LOC_Os04g54040NANA4+31987597..31988546hypothetical protein
LOC_Os04g54050OsAffx.16205.1.S1_at2/114+31989841..31994321hypothetical protein
LOC_Os04g54050Os.49232.1.S1_x_at1/114+31989841..31994321hypothetical protein
LOC_Os04g54050Os.45982.1.A1_at1/114+31989841..31994321hypothetical protein
LOC_Os04g54050OsAffx.18764.1.S1_at1/114+31989841..31994321hypothetical protein
LOC_Os04g54050OsAffx.23640.3.S1_x_at1/114+31989841..31994321hypothetical protein
LOC_Os04g54060Os.35344.18.S1_x_at11/114+31995770..32001816transposon protein, putative, Mutator sub-class
LOC_Os04g54060Os.35344.3.S1_x_at9/114+31995770..32001816transposon protein, putative, Mutator sub-class
LOC_Os04g54060OsAffx.22940.5.S1_x_at3/114+31995770..32001816transposon protein, putative, Mutator sub-class
LOC_Os04g54070OsAffx.14405.1.S1_at11/114+32004052..32007888receptor-like kinase, putative, expressed
LOC_Os04g54070OsAffx.13556.1.S1_x_at1/114+32004052..32007888receptor-like kinase, putative, expressed
LOC_Os04g54080OsAffx.14405.2.S1_at11/114+32010011..32014576D-mannose binding lectin family protein, expressed
LOC_Os04g54080OsAffx.14405.1.S1_at3/114+32010011..32014576D-mannose binding lectin family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26594.1.S1_at--1065--372Chr04:31986546..31986570 (25 bp)
ATCAGAATCATCACCATCGACTATT
LOC_Os04g54030
OsAffx.26594.1.S1_at--827--1731Chr04:31986558..31986582 (25 bp)
ACCATCGACTATTCGATCAGGCGAG
LOC_Os04g54030
OsAffx.26594.1.S1_at--933--5691Chr04:31986564..31986588 (25 bp)
GACTATTCGATCAGGCGAGATCGAC
LOC_Os04g54030
OsAffx.26594.1.S1_at--812--4491Chr04:31986605..31986629 (25 bp)
GCCGTCGCGGAAGACCTTGACGAAT
LOC_Os04g54030
OsAffx.26594.1.S1_at--826--5331Chr04:31986614..31986638 (25 bp)
GAAGACCTTGACGAATTACCGCCGG
LOC_Os04g54030
OsAffx.26594.1.S1_at--298--3571Chr04:31986620..31986644 (25 bp)
CTTGACGAATTACCGCCGGACCAGG
LOC_Os04g54030
OsAffx.26594.1.S1_at--498--9931Chr04:31986630..31986654 (25 bp)
TACCGCCGGACCAGGGTCAACTACA
LOC_Os04g54030
OsAffx.26594.1.S1_at--863--3451Chr04:31986641..31986665 (25 bp)
CAGGGTCAACTACACGTCGTCTACC
LOC_Os04g54030
OsAffx.26594.1.S1_at--873--3171Chr04:31986669..31986693 (25 bp)
CAATCAATCAGCTGGCCGACTGCAT
LOC_Os04g54030
OsAffx.26594.1.S1_at--47--8471Chr04:31986681..31986705 (25 bp)
TGGCCGACTGCATCTACACATGTAT
LOC_Os04g54030
OsAffx.26594.1.S1_at--897--4512Chr10:1809572..1809596 (25 bp)
GCCGACTGCATCTACACATGTATTA
NONE
Target Sequence 
ATCAGAATCATCACCATCGACTATTCGATCAGGCGAGATCGACCAAGCTTCAAGACGTCGCCGTCGCGGAAGACCTTGAC
GAATTACCGCCGGACCAGGGTCAACTACACGTCGTCTACCCGCCAATCAATCAGCTGGCCGACTGCATCTACACATGTAT
TA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26594.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis