Browse Element(s) Details


Os.57542.1.S1_at

Description gb:AB021080.1
DB_XREF= gi:15425628
GEN=Plw-OSB2
TID=Os.57542.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.57542 (NCBI UniGene Cluster)
DEF=Oryza sativa Plw-OSB2 mRNA for R-type basic helix-loop-helix protein, complete cds.
PROD=R-type basic helix-loop-helix protein
FL= gb:AB021080.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4705910/11Helix-loop-helix DNA-binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g47040Os.49810.1.S1_at11/114+27662061..27671679Anthocyanin regulatory Lc protein, putative, expressed
LOC_Os04g47059OsAffx.15220.1.S1_s_at11/114+27696505..27720731Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os04g47059OsAffx.15220.2.S1_s_at11/114+27696505..27720731Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os04g47059Os.57542.1.S1_at10/114+27696505..27720731Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os04g47059Os.13877.1.S1_at5/114+27696505..27720731Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os04g47059Os.27544.1.A1_at4/114+27696505..27720731Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os04g47059OsAffx.10711.1.S1_x_at3/114+27696505..27720731Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os04g47080Os.2233.1.S1_at10/114+27730292..27736548Anthocyanin regulatory Lc protein, putative, expressed
LOC_Os04g47090NANA4+27742439..27743838transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0001708biological_processcell fate specification
GO:0009813biological_processflavonoid biosynthesis
GO:0009957biological_processepidermal cell fate specification
GO:0045449biological_processregulation of transcription
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.57542.1.S1_at--110--931Chr04:27696991..27697015 (25 bp)
AGGCATCCATACTTGCAGAAACGAT
LOC_Os04g47059
Os.57542.1.S1_at--287--3911Chr04:27696929..27696953 (25 bp)
CTGGAGTCCAGCAGCAGGGAGCCAT
LOC_Os04g47059
Os.57542.1.S1_at--79--5251NONE
GTTGGCGCCCAACCGAAATTGGACA
NONE
Os.57542.1.S1_at--887--5291Chr04:27696873..27696897 (25 bp)
GAAGGCGCCGTAAGATCACCGGGAA
LOC_Os04g47059
Os.57542.1.S1_at--903--1271Chr04:27696837..27696861 (25 bp)
AGATCGGTGTCAGTGGTGGTACCTC
LOC_Os04g47059
Os.57542.1.S1_at--372--9671Chr04:27696807..27696831 (25 bp)
TACCTCGTCAACACCGTACGTATAT
LOC_Os04g47059
Os.57542.1.S1_at--720--4991Chr04:27696777..27696801 (25 bp)
GCATGTATAAGATCACCGGGCAGGA
LOC_Os04g47059
Os.57542.1.S1_at--201--7571Chr04:27696729..27696753 (25 bp)
GGTGTTGACGAGGTACCGTACGTAT
LOC_Os04g47059
Os.57542.1.S1_at--1075--3131Chr04:27696671..27696695 (25 bp)
AATTCCGAATTACCTCGTGTACTAT
LOC_Os04g47059
Os.57542.1.S1_at--651--6154Chr06:4539899..4539922 (24 bp)
GAGGTTTCGAATCCAGGTCGTCTAT
NONE
Os.57542.1.S1_at--314--9191Chr04:27696506..27696530 (25 bp)
TGCCATCTGAATTACCGCTTACTAA
LOC_Os04g47059
Target Sequence 
AGGCATCCATACTTGCAGAAACGATAACCTACCTCAAAGTGTTAGAGAAAAGAGTGAAAGAGCTGGAGTCCAGCAGCAGG
GAGCCATCGCGTTGGCGCCCAACCGAAATTGGACAGGGGAAGGCGCCGTAAGATCACCGGGAAGGAGGTCTATGAGATCG
GTGTCAGTGGTGGTACCTCGTCGGTACCTCGTCAACACCGTACGTATATGATATGCATGTATAAGATCACCGGGCAGGAG
GTCTCTGAGATGGATGTCATACGGTGTTGACGAGGTACCGTACGTATGATATATAGTTATCGTTTTCATTATGGAAAAAA
AATTCCGAATTACCTCGTGTACTATAAAAGACGCGAATATTAGGGAAGAATCTAATATCAAATAATTAGAAGGGGTGAGG
TTTCGAATCCAGGTCGTCTATCACACCACCTTGTGAAGCTAGCCGGAAAACCCCTAAGCGTTTTTTTACCTCCATGTACT
ATTGGTGCCATCTGAATTACCGCTTACTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.57542.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis