Browse Element(s) Details


Os.2233.1.S1_at

Description gb:AB021079.1
DB_XREF= gi:15425626
GEN=Plw-OSB1
TID=Os.2233.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.2233 (NCBI UniGene Cluster)
DEF=Oryza sativa Plw-OSB1 mRNA for R-type basic helix-loop-helix protein, complete cds.
PROD=R-type basic helix-loop-helix protein
FL= gb:AB021079.1 gb:U39860.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4708010/11Anthocyanin regulatory Lc protein, putative, expressed
LOC_Os11g152103/11Helix-loop-helix DNA-binding domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g47059OsAffx.15220.1.S1_s_at11/114+27696505..27720731Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os04g47059OsAffx.15220.2.S1_s_at11/114+27696505..27720731Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os04g47059Os.57542.1.S1_at10/114+27696505..27720731Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os04g47059Os.13877.1.S1_at5/114+27696505..27720731Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os04g47059Os.27544.1.A1_at4/114+27696505..27720731Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os04g47059OsAffx.10711.1.S1_x_at3/114+27696505..27720731Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os04g47080Os.2233.1.S1_at10/114+27730292..27736548Anthocyanin regulatory Lc protein, putative, expressed
LOC_Os04g47090NANA4+27742439..27743838transposon protein, putative, unclassified
LOC_Os04g47100OsAffx.22848.3.S1_x_at2/114+27746726..27752684retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0001708biological_processcell fate specification
GO:0009813biological_processflavonoid biosynthesis
GO:0009957biological_processepidermal cell fate specification
GO:0045449biological_processregulation of transcription
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.2233.1.S1_at--726--1731Chr04:27731072..27731096 (25 bp)
ACCATCGCCATGTCCATTGGAAACA
LOC_Os04g47080
Os.2233.1.S1_at--348--1632Chr11:8578548..8578572 (25 bp)
AGCGGCGCCATTGTGTGAGCAACGT
LOC_Os11g15210
Os.2233.1.S1_at--4--5952Chr11:8578532..8578556 (25 bp)
GAGCAACGTGAACGTCACCATCATG
LOC_Os11g15210
Os.2233.1.S1_at--236--991Chr04:27730893..27730917 (25 bp)
AGGAGGTTCTCCTCGAGCTGCAATG
LOC_Os04g47080
Os.2233.1.S1_at--282--6272Chr11:8578417..8578441 (25 bp)
GATGTCCTCTCGGTGCAGGCATCAA
LOC_Os11g15210
Os.2233.1.S1_at--846--4771Chr11:8578214..8578238 (25 bp)
GCTGCCGTCGAACCTGGGATGATTA
NONE
Os.2233.1.S1_at--597--6292Chr11:8578197..8578221 (25 bp)
GATGATTACAGAAGCTCTCCGGAAA
NONE
Os.2233.1.S1_at--385--6432Chr11:8577882..8577906 (25 bp)
GATCAGTATCGTCTTGGTCATTTGC
NONE
Os.2233.1.S1_at--1109--7811Chr04:27730519..27730543 (25 bp)
GGTCATTTGCTCTCATCTTGTTTAG
LOC_Os04g47080
Os.2233.1.S1_at--314--2271Chr04:27730479..27730503 (25 bp)
AAATCTTGTCGCTCTGATCAGTGCC
LOC_Os04g47080
Os.2233.1.S1_at--1071--9231Chr04:27730454..27730478 (25 bp)
TCCTTACTAGTCTCGTGATCTGTTG
LOC_Os04g47080
Target Sequence 
ACCATCGCCATGTCCATTGGAAACAAGAAGCAGGCGAAAGTGCCGTGAGATCACTGGGAAGAAGGTTTCTGCAGGAGCGA
AGAGAAAGGCGCCGGCGCCGGAGGTGGCCAGCGACGACGACACCGACGGGGAGCGGCGCCATTGTGTGAGCAACGTGAAC
GTCACCATCATGGACAACAAGGAGGTTCTCCTCGAGCTGCAATGCCAGTGGAAGGAATTGCTGATGACGAGAGTGTTCGA
CGCGATCAAGGGAGTCTCCCTGGATGTCCTCTCGGTGCAGGCATCAACATCGGATGGTCTCCTTGGACTGAAGATACANG
CCAAGTTTGCCTCATCTGCTGCCGTCGAACCTGGGATGATTACAGAAGCTCTCCGGAAAGCTATAGCAAGCTAGCTAGCT
AGAAGGTTGAGATCAGTATCGTCTTGGTCATTTGCTCTCATCTTGTTTAGGAGGTACCGGGAAATAAATCTTGTCGCTCT
GATCAGTGCCTCCTTACTAGTCTCGTGATCTGTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.2233.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis