Browse Element(s) Details


Os.5755.1.S1_at

Description gb:AK071320.1
DB_XREF= gi:32981343
TID=Os.5755.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.5755 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023088A12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023088A12, full insert sequence.
FL= gb:AK071320.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g363609/11Zinc finger, C2H2 type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g36340Os.7335.1.S1_at11/112+21924751..21929696Riboflavin biosynthesis protein ribA, chloroplast precursor, putative, expressed
LOC_Os02g36350Os.54148.1.S1_at11/112+21944016..21945903expressed protein
LOC_Os02g36360Os.5755.1.S1_at9/112+21950720..21954252Zinc finger, C2H2 type family protein, expressed
LOC_Os02g36370OsAffx.2879.1.S1_at11/112+21961946..21964357hypothetical protein
LOC_Os02g36380Os.4180.1.S1_at10/112+21970640..21974426Cryptochrome 1 apoprotein, putative, expressed
LOC_Os02g36390Os.23556.1.S1_at11/112+21974196..21980638nucleotide-sugar transporter family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003676molecular_functionnucleic acid binding
GO:0003700molecular_functiontranscription factor activity
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5755.1.S1_at--302--9051NONE
TGCAGCAAGAGCAATTTGGGCCTAT
NONE
Os.5755.1.S1_at--1156--10311Chr02:21951135..21951159 (25 bp)
TTTACCGCTCGCTGTTAGCCTGTTA
LOC_Os02g36360
Os.5755.1.S1_at--620--10431Chr02:21951113..21951137 (25 bp)
TTATGCAACTCTCTTTTACCCATGA
LOC_Os02g36360
Os.5755.1.S1_at--498--1191Chr02:21951066..21951090 (25 bp)
AGTAGTGGTATCTGTTTCCGAAGCA
LOC_Os02g36360
Os.5755.1.S1_at--1032--1771Chr02:21951012..21951036 (25 bp)
ACCGTTGGTACATCGTGTTGTATGC
LOC_Os02g36360
Os.5755.1.S1_at--850--6911Chr02:21950993..21951017 (25 bp)
GTATGCTCATTGTGTATGTCTTCAT
LOC_Os02g36360
Os.5755.1.S1_at--1154--9611Chr02:21950972..21950996 (25 bp)
TCATGATTCAGCTTTCTACGGTAGT
LOC_Os02g36360
Os.5755.1.S1_at--462--6471Chr02:21950944..21950968 (25 bp)
GATACAGGTTTCTACACGTTACAGT
LOC_Os02g36360
Os.5755.1.S1_at--1082--131Chr02:21950916..21950940 (25 bp)
ATTAAACACAACATCAGCACCCAAC
LOC_Os02g36360
Os.5755.1.S1_at--21--2951Chr02:21950833..21950857 (25 bp)
AAGGCTTCTGGCATGACAGTTTCTA
LOC_Os02g36360
Os.5755.1.S1_at--149--2551Chr02:21950719..21950743 (25 bp)
AACTCTGCTGATTTCCCTTGGGTTA
NONE
Target Sequence 
TGCAGCAAGAGCAATTTGGGCCTATGGTAGGAAGAGATGACTGAGAAGATGAATGAAGAAGGGTCCTGTGAAGAACAGAC
CTTCCCCCGGCTTGCCTCTGTCTCTCTCTCTCTCTCTCTTCCCCTGGTCTCCCCATCTTTTACCGCTCGCTGTTAGCCTG
TTATGCAACTCTCTTTTACCCATGACAAGGATCTTTATAACCTGGAAAGTAGTGGTATCTGTTTCCGAAGCAGTCGAAAT
ACCAAATGATGAAAGATATTAACCGTTGGTACATCGTGTTGTATGCTCATTGTGTATGTCTTCATGATTCAGCTTTCTAC
GGTAGTGTAGATACAGGTTTCTACACGTTACAGTAGTATTAAACACAACATCAGCACCCAACACTGTAACGAACACCATA
CATGTGAGATCTTACAATTGATCGAGGTGAAGTCACACTGAAGGCTTCTGGCATGACAGTTTCTACTGGGGTAGGCAATA
TGTGAGATGTTTTGACAGNTGATCACAGCAGTAGTAAACTGAATGGTTTTAACTTCTTTAGCTAATTTATCAGCAACTCT
GCTGATTTCCCTTGGGTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5755.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis