Browse Element(s) Details


Os.5825.1.S1_a_at

Description gb:AK101856.1
DB_XREF= gi:32987065
TID=Os.5825.1
CNT=19
FEA=FLmRNA
TIER=FL
STK=4
UG=Os.5825 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative mitochondrial processing peptidase (EC:3.4.99.41) alpha-II chain precursor (P0710E05.23), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033069O10, full insert sequence.
FL= gb:AK101856.1 gb:AK071930.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0956011/11Mitochondrial processing peptidase alpha subunit, mitochondrial precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g09530NANA1+4860680..4863917transposon protein, putative, unclassified
LOC_Os01g09540Os.1475.1.S1_at11/111+4868944..4870608plant acid phosphatase family protein, expressed
LOC_Os01g09550Os.27469.2.S1_at11/111+4876017..4882642No apical meristem protein, expressed
LOC_Os01g09550Os.27469.1.S1_a_at11/111+4876017..4882642No apical meristem protein, expressed
LOC_Os01g09560Os.5825.1.S1_a_at11/111+4888318..4893678Mitochondrial processing peptidase alpha subunit, mitochondrial precursor, putative, expressed
LOC_Os01g09570Os.12230.1.S1_a_at11/111+4902411..4906316Phosphofructokinase family protein, expressed
LOC_Os01g09580Os.613.1.S1_a_at11/111+4906785..4911172Serine/threonine-protein kinase Eg2, putative, expressed
LOC_Os01g09590Os.10204.1.S1_at10/111+4914717..4916026Myb-like DNA-binding domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0005739cellular_componentmitochondrion
GO:0005741cellular_componentmitochondrial outer membrane
GO:0005743cellular_componentmitochondrial inner membrane
GO:0005758cellular_componentmitochondrial intermembrane space
GO:0005759cellular_componentmitochondrial matrix
GO:0004222molecular_functionmetalloendopeptidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5825.1.S1_a_at--1068--5111Chr01:4892133..4892157 (25 bp)
GCAACTGAAGACATGGGACGGCAAA
LOC_Os01g09560
Os.5825.1.S1_a_at--753--5731Chr01:4892149..4892173 (25 bp)
GACGGCAAATATTGGCCTTTGGTGA
LOC_Os01g09560
Os.5825.1.S1_a_at--553--2371Chr01:4893066..4893090 (25 bp)
AAACCTGTTGAGCACCTTCTCAAGG
LOC_Os01g09560
Os.5825.1.S1_a_at--375--5091Chr01:4893077..4893101 (25 bp)
GCACCTTCTCAAGGCTGTTGATGGT
LOC_Os01g09560
Os.5825.1.S1_a_at--545--3851Chr01:4893108..4893132 (25 bp)
CTGAAAGACATTACAGCCCTTGCTG
LOC_Os01g09560
Os.5825.1.S1_a_at--36--9991Chr01:4893461..4893485 (25 bp)
TACCATATTTTACCTTTTTCTGCAA
LOC_Os01g09560
Os.5825.1.S1_a_at--414--10311Chr01:4893477..4893501 (25 bp)
TTTCTGCAACATTTGTCCACTTGAG
LOC_Os01g09560
Os.5825.1.S1_a_at--233--6811Chr01:4893519..4893543 (25 bp)
GTTTTCATCAGTTTTATGGGCCTGT
LOC_Os01g09560
Os.5825.1.S1_a_at--318--4411Chr01:4893571..4893595 (25 bp)
GCCAGGGCCTGTACAAAATACCGGT
LOC_Os01g09560
Os.5825.1.S1_a_at--339--3091Chr01:4893587..4893611 (25 bp)
AATACCGGTCTCCTTGCAAAATCTT
LOC_Os01g09560
Os.5825.1.S1_a_at--975--3271Chr01:4893603..4893627 (25 bp)
CAAAATCTTTGACACGAATGCTGAA
LOC_Os01g09560
Target Sequence 
GCAACTGAAGACATGGGACGGCAAATATTGGCCTTTGGTGAAAGGAAACCTGTTGAGCACCTTCTCAAGGCTGTTGATGG
TGTTACTCTGAAAGACATTACAGCCCTTGCTGAGAAAATCATATCATCACCATTGACAATGGCATCTCATGGAAACGTTC
TGAACGTGCCAACTTATGATTCAGTCAGTGGCAAGTTTCGCTCGAAATGAGTAGTAATGTGGTCATTGTTTTCCTCCTCC
TGGACAAGTTTTAACTGTTGATAGTTTTTCCTCAGGCCATTCATTGGCAGGGTTTCAGAGAGAAAAATAAGGAGCTTCAT
ACAATTTTGATCATTTAACTCTGGATGATTGAGAATACCATATTTTACCTTTTTCTGCAACATTTGTCCACTTGAGTTGG
AATTTTTTATGCTGTTTTCATCAGTTTTATGGGCCTGTAAATTTTAGGGCCCTCTTTCGGTGGCGGCCAGGGCCTGTACA
AAATACCGGTCTCCTTGCAAAATCTTTGACACGAATGCTGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5825.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis