Browse Element(s) Details


Os.5826.2.S1_a_at

Description gb:AK062278.1
DB_XREF= gi:32972296
TID=Os.5826.2
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.5826 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) Putative endosperm specific protein (OJ1015F07.17), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-100-C01, full insert sequence.
FL= gb:AK062278.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0360011/11Fasciclin-like arabinogalactan protein 8 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g03560Os.32569.1.S1_at11/113+1532402..1537496FHA domain containing protein, expressed
LOC_Os03g03560Os.32569.2.S1_x_at11/113+1532402..1537496FHA domain containing protein, expressed
LOC_Os03g03570Os.32644.1.S1_at7/113+1540546..1543309leucine-rich repeat transmembrane protein kinase, putative, expressed
LOC_Os03g03580Os.32644.1.S2_at5/113+1543806..1544896hypothetical protein
LOC_Os03g03590Os.17941.2.S1_x_at11/113+1546327..1550330K+ efflux antiporter, putative, expressed
LOC_Os03g03590Os.17941.1.S1_s_at11/113+1546327..1550330K+ efflux antiporter, putative, expressed
LOC_Os03g03600Os.5826.2.S1_a_at11/113+1557698..1559253Fasciclin-like arabinogalactan protein 8 precursor, putative, expressed
LOC_Os03g03610Os.14984.1.S1_a_at11/113+1560521..15741791,3-beta-glucan synthase component family protein, expressed
LOC_Os03g03610Os.54124.1.S1_at1/113+1560521..15741791,3-beta-glucan synthase component family protein, expressed
LOC_Os03g03620OsAffx.13603.1.S1_at11/113+1577054..1580404glycosyl transferase family 48 protein, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0031225cellular_componentanchored to membrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5826.2.S1_a_at--619--7691Chr03:1557954..1557978 (25 bp)
GGGTACCCGGACTACAAGATGTTCA
LOC_Os03g03600
Os.5826.2.S1_a_at--224--2611Chr03:1558017..1558041 (25 bp)
AACGCGAGGGAGTCGATCACGCTGC
LOC_Os03g03600
Os.5826.2.S1_a_at--737--4591Chr03:1558051..1558075 (25 bp)
GCGACGGGCCAATGTCGACGCTCGT
LOC_Os03g03600
Os.5826.2.S1_a_at--705--9351Chr03:1558144..1558168 (25 bp)
TCGACCCGAAGAAGATCCGTGGCCT
LOC_Os03g03600
Os.5826.2.S1_a_at--852--5411Chr03:1558952..1558976 (25 bp)
GAAGCCGGCGGATCACAAGGAAATG
LOC_Os03g03600
Os.5826.2.S1_a_at--419--7811Chr03:1559002..1559026 (25 bp)
GGTCAGTAGTGCTCGGCGCATTAGC
LOC_Os03g03600
Os.5826.2.S1_a_at--33--8671Chr03:1559035..1559059 (25 bp)
TGTGTTCCTTCGTGCTGCTTTAAGC
LOC_Os03g03600
Os.5826.2.S1_a_at--990--10551Chr03:1559078..1559102 (25 bp)
TTCTTCCATGTCCAGTGCCGGTGAT
LOC_Os03g03600
Os.5826.2.S1_a_at--664--7411Chr03:1559104..1559128 (25 bp)
GTGATTGCACGAGCTGCATTGCCAA
LOC_Os03g03600
Os.5826.2.S1_a_at--182--3851Chr03:1559117..1559141 (25 bp)
CTGCATTGCCAATTATTCCTCTGTA
LOC_Os03g03600
Os.5826.2.S1_a_at--819--10411Chr03:1559129..1559153 (25 bp)
TTATTCCTCTGTATAATGCGAGCAA
LOC_Os03g03600
Target Sequence 
GGGTACCCGGACTACAAGATGTTCAACAAGTACCTGTCGGAGACGAANGTGTNCGACGAGATCAACGCGAGGGAGTCGAT
CACGCTGCTCGTCCTCGGCGACGGGCCAATGTCGACGCTCGTNCTCNACGCCGACCAGTCGCTGGCGGGCATCAAGAACG
CGCTCCGNCTCCACGCCATCCTCGACTACTTCGACCCGAAGAAGATCCGTGGCCTCCCCGACGCCGGCCGACGCGCCGTC
GAAGCCGGCGGATCACAAGGAAATGAAGGCGTCGTCCGCCGTCGCGTTGCGGTCAGTAGTGCTCGGCGCATTAGCCGCGG
CCGTGTGTTCCTTCGTGCTGCTTTAAGCACAAGTTTTTTTTTCCCTTTCTTCCATGTCCAGTGCCGGTGATTGTGATTGC
ACGAGCTGCATTGCCAATTATTCCTCTGTATAATGCGAGCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5826.2.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis