Browse Element(s) Details


Os.5876.1.S1_x_at

Description gb:AK067289.1
DB_XREF= gi:32977307
TID=Os.5876.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.5876 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013103K22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013103K22, full insert sequence.
FL= gb:AK067289.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1584011/11zinc finger family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g15810Os.46314.3.S1_at4/118+9599178..9600218transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g15810OsAffx.7362.1.S1_x_at1/118+9599178..9600218transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g15820NANA8+9600617..9601396transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g15830OsAffx.15729.1.S1_at1/118+9606649..9618112retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g15830Os.51348.1.S1_x_at1/118+9606649..9618112retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g15840Os.5876.1.S1_x_at11/118+9622252..9627829zinc finger family protein, putative, expressed
LOC_Os08g15840Os.5876.2.S1_at7/118+9622252..9627829zinc finger family protein, putative, expressed
LOC_Os08g15850OsAffx.5829.1.S1_at11/118+9627728..9628455hypothetical protein
LOC_Os08g15860OsAffx.5830.1.S1_x_at11/118+9639840..9640295hypothetical protein
LOC_Os08g15870OsAffx.19542.3.S1_x_at2/118+9642076..9646580retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5876.1.S1_x_at--826--1511Chr08:9622851..9622875 (25 bp)
AGCAGCTCAACATCTATCCGTGGTG
LOC_Os08g15840
Os.5876.1.S1_x_at--404--7911Chr08:9622692..9622716 (25 bp)
GGTTCCAAATATGCTGGTCCTGCAG
LOC_Os08g15840
Os.5876.1.S1_x_at--895--9251Chr08:9622675..9622699 (25 bp)
TCCTGCAGCAATCACTAGTTCCAAG
LOC_Os08g15840
Os.5876.1.S1_x_at--401--2831Chr08:9622653..9622677 (25 bp)
AAGTATGCCGGTTCTTTGCACCGAA
LOC_Os08g15840
Os.5876.1.S1_x_at--1112--6411Chr08:9622593..9622617 (25 bp)
GATCTAGGCTGCTCATCGTTTCGAA
LOC_Os08g15840
Os.5876.1.S1_x_at--30--9411Chr08:9622499..9622523 (25 bp)
TCGTCAATTGCTTCAGGCCGGATGT
LOC_Os08g15840
Os.5876.1.S1_x_at--659--5071Chr08:9622474..9622498 (25 bp)
GCAGCGGTCGTCTTCGTATAGGGAA
LOC_Os08g15840
Os.5876.1.S1_x_at--749--7151Chr08:9622412..9622436 (25 bp)
GTCTATTTGTATTTGTGCCTCCCAT
LOC_Os08g15840
Os.5876.1.S1_x_at--145--10271Chr08:9622340..9622364 (25 bp)
TTTGTTCATGCTTTTCTCTTGGCTT
LOC_Os08g15840
Os.5876.1.S1_x_at--738--311Chr08:9622311..9622335 (25 bp)
ATACCTGTAGTCTGTTCTGTTCTTC
LOC_Os08g15840
Os.5876.1.S1_x_at--805--8791Chr08:9622294..9622318 (25 bp)
TGTTCTTCTGCTTGTGGTCTTGTAA
LOC_Os08g15840
Target Sequence 
AGCAGCTCAACATCTATCCGTGGTGTTCCTGGCTCCATACCTTGCCCTTTGTGCCGCCACACGATTGTCTCATTCGTTAG
ACTCACAAGTACAACCCCAATAAAGGAGCTTCCGTGGACGAACAAATCGTTAGCTCTATGTGCAGCAGGGGCAAGCACCG
GTTCCAAATATGCTGGTCCTGCAGCAATCACTAGTTCCAAGTATGCCGGTTCTTTGCACCGAAGGTCTGAGATGCGCAGC
CTGCGCTCCTCTTCAGTTGATCTAGGCTGCTCATCGTTTCGAACCGCGAGCTCAGGGAAGCTGTCGTCGATAAAGCTGAA
TTGCACCGGAGCCGACGAGACGATGCCCTGCCTCGTCAATTGCTTCAGGCCGGATGTGCAGCGGTCGTCTTCGTATAGGG
AAAGAATTAGGAGATATTCACAATTTTCATAGCATTACTGTCTATTTGTATTTGTGCCTCCCATCCATTTTGTGAGTTTC
CGGGGGTTTGGCAGTACAAACTTGTGCAGTGTTTGTTCATGCTTTTCTCTTGGCTTCTTCATACCTGTAGTCTGTTCTGT
TCTTCTGCTTGTGGTCTTGTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5876.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis