Browse Element(s) Details


OsAffx.5829.1.S1_at

Description tigr:9636.m01591
TID=OsAffx.5829.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1585011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g15830OsAffx.15729.1.S1_at1/118+9606649..9618112retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g15830Os.51348.1.S1_x_at1/118+9606649..9618112retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g15840Os.5876.1.S1_x_at11/118+9622252..9627829zinc finger family protein, putative, expressed
LOC_Os08g15840Os.5876.2.S1_at7/118+9622252..9627829zinc finger family protein, putative, expressed
LOC_Os08g15850OsAffx.5829.1.S1_at11/118+9627728..9628455hypothetical protein
LOC_Os08g15860OsAffx.5830.1.S1_x_at11/118+9639840..9640295hypothetical protein
LOC_Os08g15870OsAffx.19542.3.S1_x_at2/118+9642076..9646580retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5829.1.S1_at--261--4531Chr08:9627778..9627802 (25 bp)
GCCGCGCTGCGGGAAGAACGAGGGA
LOC_Os08g15850
OsAffx.5829.1.S1_at--1--1371Chr08:9627813..9627837 (25 bp)
AGAGCACGAGGTGGCAGGAGCAGCA
LOC_Os08g15850
OsAffx.5829.1.S1_at--398--991Chr08:9627846..9627977 (25 bp)
AGGAGGAGTTAGTTTCTGTAGCTGA
LOC_Os08g15850
OsAffx.5829.1.S1_at--148--10451Chr08:9627961..9627985 (25 bp)
TTAGTTTCTGTAGCTGAAGCCGCTG
LOC_Os08g15850
OsAffx.5829.1.S1_at--1128--991Chr08:9628036..9628060 (25 bp)
AGGTTGTTTGTGACGTTTGCTCTTC
LOC_Os08g15850
OsAffx.5829.1.S1_at--766--8931Chr08:9628046..9628070 (25 bp)
TGACGTTTGCTCTTCGGTTGTATCA
LOC_Os08g15850
OsAffx.5829.1.S1_at--757--6851Chr08:9628050..9628074 (25 bp)
GTTTGCTCTTCGGTTGTATCAGAAA
LOC_Os08g15850
OsAffx.5829.1.S1_at--788--9071Chr08:9628053..9628077 (25 bp)
TGCTCTTCGGTTGTATCAGAAATTC
LOC_Os08g15850
OsAffx.5829.1.S1_at--775--991Chr08:9628078..9628102 (25 bp)
AGGATTCAGAAGCTACCTACTGGCA
LOC_Os08g15850
OsAffx.5829.1.S1_at--236--1731Chr08:9628092..9628116 (25 bp)
ACCTACTGGCAGTTTCTTCTCCTTT
LOC_Os08g15850
OsAffx.5829.1.S1_at--48--6811Chr08:9628119..9628143 (25 bp)
GTTTTCTACTACTGCATTTGATTTT
LOC_Os08g15850
Target Sequence 
GCCGCGCTGCGGGAAGAACGAGGGAGGCGTGGAGGAGAGCACGAGGTGGCAGGAGCAGCAGCAGCTGGAGGAGGAGTTAG
TTTCTGTAGCTGAAGCCGCTGGGGAAGGGAGGAGAGGTGGAGAGGAGGAGCAGAAAGGCGTGGAATTTGGGAGGTTGTTT
GTGACGTTTGCTCTTCGGTTGTATCAGAAATTCAGGATTCAGAAGCTACCTACTGGCAGTTTCTTCTCCTTTTTGTTTTC
TACTACTGCATTTGATTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5829.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis