Browse Element(s) Details


Os.5890.1.S1_at

Description gb:AK061333.1
DB_XREF= gi:32971351
TID=Os.5890.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.5890 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-303-A11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-303-A11, full insert sequence.
FL= gb:AK061333.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4569011/11B-box zinc finger family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g45650Os.18449.1.S1_a_at11/114+26781712..26784533expressed protein
LOC_Os04g45670Os.9278.1.S1_s_at11/114+26796479..26800409Variant SH3 domain containing protein, expressed
LOC_Os04g45690Os.5890.1.S1_at11/114+26808184..26810412B-box zinc finger family protein, expressed
LOC_Os04g45700OsAffx.4101.1.S1_at11/114+26813732..26815736COBRA-like protein 6 precursor, putative, expressed
LOC_Os04g45710OsAffx.4102.1.S1_at9/114+26816354..26821348hypothetical protein
LOC_Os04g45720Os.18249.1.S1_at10/114+26824892..26829817aldehyde dehydrogenase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009651biological_processresponse to salt stress
GO:0045449biological_processregulation of transcription
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5890.1.S1_at--33--4471Chr04:26810047..26810071 (25 bp)
GCCTCCCTGCTTGTACTGGTGAAAA
LOC_Os04g45690
Os.5890.1.S1_at--911--2411Chr04:26810072..26810096 (25 bp)
AAAAACGTGCGCTTATCAGCCACAG
LOC_Os04g45690
Os.5890.1.S1_at--945--391Chr04:26810086..26810110 (25 bp)
ATCAGCCACAGCCAGTACGAAATGT
LOC_Os04g45690
Os.5890.1.S1_at--712--9931Chr04:26810110..26810134 (25 bp)
TACGATGCTTGTGTACCAGTGTACT
LOC_Os04g45690
Os.5890.1.S1_at--1088--5911Chr04:26810184..26810208 (25 bp)
GAGCTTAACGCGTGTCTTGGATGAA
LOC_Os04g45690
Os.5890.1.S1_at--158--671Chr04:26810204..26810228 (25 bp)
ATGAATCCCTGACTCCTGAATGTTT
LOC_Os04g45690
Os.5890.1.S1_at--457--7851Chr04:26810246..26810270 (25 bp)
GGTAGTGTCCTCTTTGGGCGGCAAA
LOC_Os04g45690
Os.5890.1.S1_at--142--10191Chr04:26810275..26810299 (25 bp)
TATACGCCCCTTGCGAACATGTCGA
LOC_Os04g45690
Os.5890.1.S1_at--757--2111Chr04:26810291..26810315 (25 bp)
ACATGTCGAACTGTACGGTCTGCCA
LOC_Os04g45690
Os.5890.1.S1_at--272--7811Chr04:26810307..26810331 (25 bp)
GGTCTGCCATTTAATCTGCACGTTC
LOC_Os04g45690
Os.5890.1.S1_at--825--3431Chr04:26810360..26810384 (25 bp)
CAGATTTTGTGACTCTTCCATTAGG
LOC_Os04g45690
Target Sequence 
GCCTCCCTGCTTGTACTGGTGAAAAAAAAACGTGCGCTTATCAGCCACAGCCAGTACGAAATGTACGATGCTTGTGTACC
AGTGTACTGAGGTAGTAGCGTTAGAAGATTAGGAATTTAGTAGTGGATGTTGATTTTGAGCTTAACGCGTGTCTTGGATG
AATCCCTGACTCCTGAATGTTTGGGGAATTAATGTGAGTGGTAGTGTCCTCTTTGGGCGGCAAAGAATTATACGCCCCTT
GCGAACATGTCGAACTGTACGGTCTGCCATTTAATCTGCACGTTCACCCCTCTGCATCTTCTGTACTGCAANTCAGATTT
TGTGACTCTTCCATTAGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5890.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis