Browse Element(s) Details


Os.18449.1.S1_a_at

Description gb:AK060574.1
DB_XREF= gi:32970592
TID=Os.18449.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.18449 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023055K24, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-023-D04, full insert sequence.
FL= gb:AK060574.1 gb:AK099144.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4565011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g45590OsAffx.14278.1.S1_at11/114+26756515..26757416glyoxalase family protein, expressed
LOC_Os04g45600Os.47301.1.A1_at11/114+26758358..26759578expressed protein
LOC_Os04g45610Os.18729.1.S1_at11/114+26759553..26763085expressed protein
LOC_Os04g45610Os.18729.2.S1_at9/114+26759553..26763085expressed protein
LOC_Os04g45620OsAffx.4099.1.S1_at11/114+26764744..26765501hypothetical protein
LOC_Os04g45620OsAffx.4542.1.S1_at2/114+26764744..26765501hypothetical protein
LOC_Os04g45630OsAffx.14279.1.S1_at11/114+26769261..26770253hypothetical protein
LOC_Os04g45640OsAffx.14280.1.S1_at11/114+26776385..26777270hypothetical protein
LOC_Os04g45650Os.18449.1.S1_a_at11/114+26781712..26784533expressed protein
LOC_Os04g45670Os.9278.1.S1_s_at11/114+26796479..26800409Variant SH3 domain containing protein, expressed
LOC_Os04g45690Os.5890.1.S1_at11/114+26808184..26810412B-box zinc finger family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18449.1.S1_a_at--389--3991Chr04:26783331..26783355 (25 bp)
CGTGGCGTCGTTCTAGCTAAAGCAA
LOC_Os04g45650
Os.18449.1.S1_a_at--781--7531Chr04:26783381..26783405 (25 bp)
GTGGCTGTACATTTTTCCAGCCGTA
LOC_Os04g45650
Os.18449.1.S1_a_at--985--10371Chr04:26783393..26783417 (25 bp)
TTTTCCAGCCGTATTAGTCCTGTAC
LOC_Os04g45650
Os.18449.1.S1_a_at--617--10211Chr04:26783404..26783428 (25 bp)
TATTAGTCCTGTACCGTACCTGGAT
LOC_Os04g45650
Os.18449.1.S1_a_at--502--9191Chr04:26783446..26783470 (25 bp)
TCCAGTATTATCTTAGTTCCGGTTG
LOC_Os04g45650
Os.18449.1.S1_a_at--579--991Chr04:26783485..26783509 (25 bp)
AGGTGCCTTTAGGTCATGTTAGGTC
LOC_Os04g45650
Os.18449.1.S1_a_at--965--731Chr04:26783500..26783524 (25 bp)
ATGTTAGGTCTAGGAATTCAGCTTT
LOC_Os04g45650
Os.18449.1.S1_a_at--756--8211Chr04:26783512..26783536 (25 bp)
GGAATTCAGCTTTCCGGTGCTCCAG
LOC_Os04g45650
Os.18449.1.S1_a_at--541--10791Chr04:26783558..26783582 (25 bp)
TTGTTAGGGCACTGCTGCTGTAGCA
LOC_Os04g45650
Os.18449.1.S1_a_at--903--5051Chr04:26783597..26783621 (25 bp)
GCAGCGCTAGCGCAGAACTTCATTT
LOC_Os04g45650
Os.18449.1.S1_a_at--316--5051Chr04:26783608..26783632 (25 bp)
GCAGAACTTCATTTCCATTCTAGCT
LOC_Os04g45650
Target Sequence 
CGTGGCGTCGTTCTAGCTAAAGCAAGCTAGCCACCCCGCGCGCCCCCGCGGTGGCTGTACATTTTTCCAGCCGTATTAGT
CCTGTACCGTACCTGGATTTTTTTCCCCTTTCTTTTCCAGTATTATCTTAGTTCCGGTTGGATTAATTAGAGTTAGGTGC
CTTTAGGTCATGTTAGGTCTAGGAATTCAGCTTTCCGGTGCTCCAGCTCAAAAGCTTTTACTATAGTTTGTTAGGGCACT
GCTGCTGTAGCAGCAGTGCAGCCGCGGCAGCGCTAGCGCAGAACTTCATTTCCATTCTAGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18449.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis