Browse Element(s) Details


Os.18729.2.S1_at

Description gb:AK100828.1
DB_XREF= gi:32986037
TID=Os.18729.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.18729 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023123A18, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023123A18, full insert sequence.
FL= gb:AK100828.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g456109/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g45560NANA4+26734313..26734822hypothetical protein
LOC_Os04g45570Os.21851.1.S1_at11/114+26735390..26741178expressed protein
LOC_Os04g45580Os.54166.1.S1_at11/114+26743354..26748966kinesin heavy chain, putative, expressed
LOC_Os04g45580Os.20403.2.S1_x_at1/114+26743354..26748966kinesin heavy chain, putative, expressed
LOC_Os04g45590OsAffx.14278.1.S1_at11/114+26756515..26757416glyoxalase family protein, expressed
LOC_Os04g45600Os.47301.1.A1_at11/114+26758358..26759578expressed protein
LOC_Os04g45610Os.18729.1.S1_at11/114+26759553..26763085expressed protein
LOC_Os04g45610Os.18729.2.S1_at9/114+26759553..26763085expressed protein
LOC_Os04g45620OsAffx.4099.1.S1_at11/114+26764744..26765501hypothetical protein
LOC_Os04g45620OsAffx.4542.1.S1_at2/114+26764744..26765501hypothetical protein
LOC_Os04g45630OsAffx.14279.1.S1_at11/114+26769261..26770253hypothetical protein
LOC_Os04g45640OsAffx.14280.1.S1_at11/114+26776385..26777270hypothetical protein
LOC_Os04g45650Os.18449.1.S1_a_at11/114+26781712..26784533expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18729.2.S1_at--1152--5191Chr04:26762383..26762407 (25 bp)
GAATTTTTTATACATCTCCAATCGT
LOC_Os04g45610
Os.18729.2.S1_at--656--3191Chr04:26762365..26762389 (25 bp)
CAATCGTTGTTACCTGTGGCACTGT
LOC_Os04g45610
Os.18729.2.S1_at--470--4271Chr04:26762353..26762377 (25 bp)
CCTGTGGCACTGTTGTTTCTTTGAA
LOC_Os04g45610
Os.18729.2.S1_at--534--10311NONE
TTTCTTTGAATTGAGCAGCGTATGC
NONE
Os.18729.2.S1_at--1028--4631NONE
GCGTATGCACGTTTTCAGTCCAGAA
NONE
Os.18729.2.S1_at--91--3111Chr04:26762297..26762321 (25 bp)
AATAGTTCTCTGTTTTTCGCCTAAT
LOC_Os04g45610
Os.18729.2.S1_at--655--6491Chr04:26762251..26762275 (25 bp)
GATAGTAGTCTTCGATATTTCAGTA
LOC_Os04g45610
Os.18729.2.S1_at--743--11Chr04:26762230..26762254 (25 bp)
AGTACGATTCAACAAAAGGCCTGTT
LOC_Os04g45610
Os.18729.2.S1_at--354--891Chr04:26762214..26762238 (25 bp)
AGGCCTGTTGATGGACATGTATGAA
LOC_Os04g45610
Os.18729.2.S1_at--631--1611Chr04:26762187..26762211 (25 bp)
AGCTGATACTGTATTGTACCAACCA
LOC_Os04g45610
Os.18729.2.S1_at--387--6971Chr04:26762172..26762196 (25 bp)
GTACCAACCAGAACACTATTCTCTA
LOC_Os04g45610
Target Sequence 
GAATTTTTTATACATCTCCAATCGTTGTTACCTGTGGCACTGTTGTTTCTTTGAATTGAGCAGCGTATGCACGTTTTCAG
TCCAGAAATAGTTCTCTGTTTTTCGCCTAATAGAATATACGCAAAAGAAGATGATAGTAGTCTTCGATATTTCAGTACGA
TTCAACAAAAGGCCTGTTGATGGACATGTATGAATAAGCTGATACTGTATTGTACCAACCAGAACACTATTCTCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18729.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis