Browse Element(s) Details


Os.54166.1.S1_at

Description gb:AK102262.1
DB_XREF= gi:32987471
TID=Os.54166.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54166 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033088K23, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033088K23, full insert sequence.
FL= gb:AK102262.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4558011/11kinesin heavy chain, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g45530OsAffx.4098.1.S1_at11/114+26718949..26719543hypothetical protein
LOC_Os04g45540NANA4+26721433..26727660retrotransposon protein, putative, unclassified
LOC_Os04g45550NANA4+26728507..26731261retrotransposon protein, putative, unclassified
LOC_Os04g45560NANA4+26734313..26734822hypothetical protein
LOC_Os04g45570Os.21851.1.S1_at11/114+26735390..26741178expressed protein
LOC_Os04g45580Os.54166.1.S1_at11/114+26743354..26748966kinesin heavy chain, putative, expressed
LOC_Os04g45580Os.20403.2.S1_x_at1/114+26743354..26748966kinesin heavy chain, putative, expressed
LOC_Os04g45590OsAffx.14278.1.S1_at11/114+26756515..26757416glyoxalase family protein, expressed
LOC_Os04g45600Os.47301.1.A1_at11/114+26758358..26759578expressed protein
LOC_Os04g45610Os.18729.1.S1_at11/114+26759553..26763085expressed protein
LOC_Os04g45610Os.18729.2.S1_at9/114+26759553..26763085expressed protein
LOC_Os04g45620OsAffx.4099.1.S1_at11/114+26764744..26765501hypothetical protein
LOC_Os04g45620OsAffx.4542.1.S1_at2/114+26764744..26765501hypothetical protein
LOC_Os04g45630OsAffx.14279.1.S1_at11/114+26769261..26770253hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0007017biological_processmicrotubule-based process
GO:0003777molecular_functionmicrotubule motor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54166.1.S1_at--389--331Chr04:26743928..26744044 (25 bp)
ATACTTCTCTAGTTTCAAGTGCGAA
LOC_Os04g45580
Os.54166.1.S1_at--175--2311Chr04:26743889..26743913 (25 bp)
AAAGGGAGATGCTCTGCAGGCAGAT
LOC_Os04g45580
Os.54166.1.S1_at--1151--531Chr04:26743723..26743747 (25 bp)
ATCCCTTGTTGCCAGACTGATCGGA
LOC_Os04g45580
Os.54166.1.S1_at--174--8851Chr04:26743706..26743730 (25 bp)
TGATCGGACTCCTTGAGCCAGGGAA
LOC_Os04g45580
Os.54166.1.S1_at--897--10811Chr04:26743664..26743688 (25 bp)
TTGGGTTAAGTTTTGCGCCGCAGCA
LOC_Os04g45580
Os.54166.1.S1_at--504--5031Chr04:26743642..26743666 (25 bp)
GCAGTTCACTCGGAGATCCTACAAT
LOC_Os04g45580
Os.54166.1.S1_at--1080--8391Chr04:26743604..26743628 (25 bp)
GGCGCTCTTCTCTGAACTGATTGAA
LOC_Os04g45580
Os.54166.1.S1_at--747--10351Chr04:26743519..26743543 (25 bp)
TTTTAGGTCCTTTGTCATGCACTTC
LOC_Os04g45580
Os.54166.1.S1_at--1085--8031Chr04:26743427..26743451 (25 bp)
GGAGTTCTATATCACCTGAATTGCA
LOC_Os04g45580
Os.54166.1.S1_at--441--2751Chr04:26743373..26743397 (25 bp)
AAGACTTCCGAATGTTAACAGCCAC
LOC_Os04g45580
Os.54166.1.S1_at--917--9771Chr04:26743358..26743382 (25 bp)
TAACAGCCACTCAGCATTCAGAAGT
LOC_Os04g45580
Target Sequence 
ATACTTCTCTAGTTTCAAGTGCGAAGAAGTTGCAGNGCGAAAGGGAGATGCTCTGCAGGCAGATGCAAAGACGGNTCTCA
ATCGAGGAACGAGAGAGCATGTACACCAAATGGGGGGTTTCACTTGNCCTCCAAGAGGAGAAGGCTACAGGTTGNTCGTT
GNCTTTGGACCGAAANCAAAGACCTGGAGCATGTCAGGGAGAGTGCATCCCTTGTTGCCAGACTGATCGGACTCCTTGAG
CCAGGGAAGGCCCTGAGAGAGATGTTTGGGTTAAGTTTTGCGCCGCAGCAGTTCACTCGGAGATCCTACAATAGCTGGAG
ATATGGGCGCTCTTCTCTGAACTGATTGAACCTACAAGATGCTACTGACGGAAGGGGGCTTTCCAGTTTTCCCATTTTGT
TTTGTTTTGCTTTTAGGTCCTTTGTCATGCACTTCTGTATGATAGATGTAACTCATTTGCTATTTTTTATTGGACGATCA
GTAGGGTCGATCTTATACAAAAGGAGTTCTATATCACCTGAATTGCAAGGTTAAAATGTATGTTCAACTAACACGAAAGA
CTTCCGAATGTTAACAGCCACTCAGCATTCAGAAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54166.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis