Browse Element(s) Details


OsAffx.14279.1.S1_at

Description tigr:9632.m04389
TID=OsAffx.14279.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to AJ492841 ferulate-5-hydroxylase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4563011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g45580Os.54166.1.S1_at11/114+26743354..26748966kinesin heavy chain, putative, expressed
LOC_Os04g45580Os.20403.2.S1_x_at1/114+26743354..26748966kinesin heavy chain, putative, expressed
LOC_Os04g45590OsAffx.14278.1.S1_at11/114+26756515..26757416glyoxalase family protein, expressed
LOC_Os04g45600Os.47301.1.A1_at11/114+26758358..26759578expressed protein
LOC_Os04g45610Os.18729.1.S1_at11/114+26759553..26763085expressed protein
LOC_Os04g45610Os.18729.2.S1_at9/114+26759553..26763085expressed protein
LOC_Os04g45620OsAffx.4099.1.S1_at11/114+26764744..26765501hypothetical protein
LOC_Os04g45620OsAffx.4542.1.S1_at2/114+26764744..26765501hypothetical protein
LOC_Os04g45630OsAffx.14279.1.S1_at11/114+26769261..26770253hypothetical protein
LOC_Os04g45640OsAffx.14280.1.S1_at11/114+26776385..26777270hypothetical protein
LOC_Os04g45650Os.18449.1.S1_a_at11/114+26781712..26784533expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0009411biological_processresponse to UV
GO:0009699biological_processphenylpropanoid biosynthesis
GO:0009809biological_processlignin biosynthesis
GO:0009813biological_processflavonoid biosynthesis
GO:0004497molecular_functionmonooxygenase activity
GO:0016711molecular_functionflavonoid 3'-monooxygenase activity
GO:0019825molecular_functionoxygen binding
GO:0046424molecular_functionferulate 5-hydroxylase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14279.1.S1_at--680--9931Chr04:26769854..26769878 (25 bp)
TACGGGCCAGAGACAGATCCAGAAA
LOC_Os04g45630
OsAffx.14279.1.S1_at--614--7631Chr04:26769818..26769842 (25 bp)
GGGACTAAACATATCGAGTACATCG
LOC_Os04g45630
OsAffx.14279.1.S1_at--913--7672Chr08:12266888..12266918 (25 bp)
GGGTATCCATGAGTTTTGTAGGTGT
NONE
OsAffx.14279.1.S1_at--67--9931Chr04:26769641..26769665 (25 bp)
TACGGGCCCTTGTGGCGCCAGCTGC
LOC_Os04g45630
OsAffx.14279.1.S1_at--528--4411Chr04:26769625..26769649 (25 bp)
GCCAGCTGCGGAAGCTGTGCATCAA
LOC_Os04g45630
OsAffx.14279.1.S1_at--736--8691Chr04:26769610..26769634 (25 bp)
TGTGCATCAACAGGCTCTTCAACCG
LOC_Os04g45630
OsAffx.14279.1.S1_at--146--3811Chr04:26769539..26769563 (25 bp)
CTCCTGCGGGAGGTGACCAAGAACA
LOC_Os04g45630
OsAffx.14279.1.S1_at--440--4811Chr04:26769489..26769513 (25 bp)
GCTCGTGTTCGGCATGTCGATGAAA
LOC_Os04g45630
OsAffx.14279.1.S1_at--825--7191Chr04:26769474..26769498 (25 bp)
GTCGATGAAAATCACTCTCCGGCTT
LOC_Os04g45630
OsAffx.14279.1.S1_at--283--8551Chr04:26769397..26769421 (25 bp)
TGGAGCTAGCACTGGCCAGGCTGCT
LOC_Os04g45630
OsAffx.14279.1.S1_at--1000--6171Chr04:26769314..26769338 (25 bp)
GAGGAGACATATGGGCTCACCGCGC
LOC_Os04g45630
Target Sequence 
TACGGGCCAGAGACAGATCCAGAAATAAAAAGTTGGGGGACTAAACATATCGAGTACATCGGGGGTATCCATGAGTTTTG
TAGGTGTAGGGGGGACTTCTTGCACCCACGTTGGATCCGCCCCTGCTACGGGCCCTTGTGGCGCCAGCTGCGGAAGCTGT
GCATCAACAGGCTCTTCAACCGGCGCCGGGCCGCGTCGTGGGCAGCTGTCCACGACGGGGTCGATAGCCTCCTGCGGGAG
GTGACCAAGAACAGCGGCGCGGTGGTCAACGTCGGCGAGCTCGTGTTCGGCATGTCGATGAAAATCACTCTCCGGCTTCG
ACTGGAGCTTGCGGGAGGTGTCCCGGGCATGCAGCTGGGGATGCTCGCGGTGGAGCTAGCACTGGCCAGGCTGCTCCACG
GCTTCGACTGGAGCTTGCCCGGCGGGACGGGGTCGGCCGGCGAGCTCGACATGGAGGAGACATATGGGCTCACCGCGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14279.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis