Browse Element(s) Details


OsAffx.14280.1.S1_at

Description tigr:9632.m04390
TID=OsAffx.14280.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4564011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g45590OsAffx.14278.1.S1_at11/114+26756515..26757416glyoxalase family protein, expressed
LOC_Os04g45600Os.47301.1.A1_at11/114+26758358..26759578expressed protein
LOC_Os04g45610Os.18729.1.S1_at11/114+26759553..26763085expressed protein
LOC_Os04g45610Os.18729.2.S1_at9/114+26759553..26763085expressed protein
LOC_Os04g45620OsAffx.4099.1.S1_at11/114+26764744..26765501hypothetical protein
LOC_Os04g45620OsAffx.4542.1.S1_at2/114+26764744..26765501hypothetical protein
LOC_Os04g45630OsAffx.14279.1.S1_at11/114+26769261..26770253hypothetical protein
LOC_Os04g45640OsAffx.14280.1.S1_at11/114+26776385..26777270hypothetical protein
LOC_Os04g45650Os.18449.1.S1_a_at11/114+26781712..26784533expressed protein
LOC_Os04g45670Os.9278.1.S1_s_at11/114+26796479..26800409Variant SH3 domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14280.1.S1_at--833--371Chr04:26776426..26776450 (25 bp)
ATCAACAATTGACCACACACATCTC
LOC_Os04g45640
OsAffx.14280.1.S1_at--432--3171Chr04:26776432..26776456 (25 bp)
AATTGACCACACACATCTCTGTAGC
LOC_Os04g45640
OsAffx.14280.1.S1_at--802--5851Chr04:26776436..26776460 (25 bp)
GACCACACACATCTCTGTAGCATAT
LOC_Os04g45640
OsAffx.14280.1.S1_at--753--2091Chr04:26776444..26776468 (25 bp)
ACATCTCTGTAGCATATCGCATCGC
LOC_Os04g45640
OsAffx.14280.1.S1_at--43--471Chr04:26776446..26776470 (25 bp)
ATCTCTGTAGCATATCGCATCGCCA
LOC_Os04g45640
OsAffx.14280.1.S1_at--551--6951Chr04:26776452..26776476 (25 bp)
GTAGCATATCGCATCGCCACACCGG
LOC_Os04g45640
OsAffx.14280.1.S1_at--888--931Chr04:26776478..26776502 (25 bp)
AGGCACAACGCCTTCAGCGCAGTAG
LOC_Os04g45640
OsAffx.14280.1.S1_at--376--2211Chr04:26776482..26776506 (25 bp)
ACAACGCCTTCAGCGCAGTAGGAAA
LOC_Os04g45640
OsAffx.14280.1.S1_at--924--3651Chr04:26776489..26776513 (25 bp)
CTTCAGCGCAGTAGGAAAGGGACGT
LOC_Os04g45640
OsAffx.14280.1.S1_at--1122--5551Chr04:26776503..26776713 (25 bp)
GAAAGGGACGTGAGCATGCCCACCG
LOC_Os04g45640
OsAffx.14280.1.S1_at--311--8111Chr04:26776508..26776718 (25 bp)
GGACGTGAGCATGCCCACCGCAAAG
LOC_Os04g45640
Target Sequence 
ATCAACAATTGACCACACACATCTCTGTAGCATATCGCATCGCCACACCGGCAGGCACAACGCCTTCAGCGCAGTAGGAA
AGGGACGTGAGCATGCCCACCGCAAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14280.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis