Browse Element(s) Details


OsAffx.4099.1.S1_at

Description tigr:9632.m04388
TID=OsAffx.4099.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4562011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g45570Os.21851.1.S1_at11/114+26735390..26741178expressed protein
LOC_Os04g45580Os.54166.1.S1_at11/114+26743354..26748966kinesin heavy chain, putative, expressed
LOC_Os04g45580Os.20403.2.S1_x_at1/114+26743354..26748966kinesin heavy chain, putative, expressed
LOC_Os04g45590OsAffx.14278.1.S1_at11/114+26756515..26757416glyoxalase family protein, expressed
LOC_Os04g45600Os.47301.1.A1_at11/114+26758358..26759578expressed protein
LOC_Os04g45610Os.18729.1.S1_at11/114+26759553..26763085expressed protein
LOC_Os04g45610Os.18729.2.S1_at9/114+26759553..26763085expressed protein
LOC_Os04g45620OsAffx.4099.1.S1_at11/114+26764744..26765501hypothetical protein
LOC_Os04g45620OsAffx.4542.1.S1_at2/114+26764744..26765501hypothetical protein
LOC_Os04g45630OsAffx.14279.1.S1_at11/114+26769261..26770253hypothetical protein
LOC_Os04g45640OsAffx.14280.1.S1_at11/114+26776385..26777270hypothetical protein
LOC_Os04g45650Os.18449.1.S1_a_at11/114+26781712..26784533expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4099.1.S1_at--296--9311Chr04:26764799..26764823 (25 bp)
TCCCCTTCGTCGCGATGGTGAAGAT
LOC_Os04g45620
OsAffx.4099.1.S1_at--621--5351Chr04:26765216..26765240 (25 bp)
GAAGAGATTTTCCTCAACGGCAGCT
LOC_Os04g45620
OsAffx.4099.1.S1_at--350--6551Chr04:26765221..26765245 (25 bp)
GATTTTCCTCAACGGCAGCTGCAGA
LOC_Os04g45620
OsAffx.4099.1.S1_at--388--3432Chr05:21547900..21547924 (25 bp)
CAGAGGCCTAGGAATTCAGCGAAGC
NONE
OsAffx.4099.1.S1_at--134--9673Chr06:6881729..6881750 (22 bp)
TCAGCGAAGCGGAAATGGATCTTGC
NONE
OsAffx.4099.1.S1_at--625--5571Chr04:26765362..26765386 (25 bp)
GAAATGGATCTTGCCGGCCCGCATT
LOC_Os04g45620
OsAffx.4099.1.S1_at--1016--4211Chr04:26765380..26765404 (25 bp)
CCGCATTTGGTTGGCTTGTTTTGGC
LOC_Os04g45620
OsAffx.4099.1.S1_at--217--8731Chr04:26765396..26765420 (25 bp)
TGTTTTGGCTGGGACGACGGATGAA
LOC_Os04g45620
OsAffx.4099.1.S1_at--758--5532Chr05:21547984..21548008 (25 bp)
GAAAGTGGGCTAAACCAGGCGACGT
NONE
OsAffx.4099.1.S1_at--251--4091Chr04:26765437..26765461 (25 bp)
CGACGTTTGGCATCAACTCATATGA
LOC_Os04g45620
OsAffx.4099.1.S1_at--1083--8491Chr04:26765444..26765468 (25 bp)
TGGCATCAACTCATATGAAGCGAAT
LOC_Os04g45620
Target Sequence 
TCCCCTTCGTCGCGATGGTGAAGATGGCGACGAAGGACAAAGGGGCGGCAGATGCCTGGGAGTCCGGGTGGAAGAGATTT
TCCTCAACGGCAGCTGCAGAGGTCTCCGACGACGGCCCTTGGGGCGGCGACGAGCTGGGAGTCCAGGAGGTGGAGGAGGA
TCCCGAAGACGGTGGCGGCCCTAGGGGCGGCAGAGGCCTAGGAATTCAGCGAAGCGGAAATGGATCTTGCCGGCCCGCAT
TTGGTTGGCTTGTTTTGGCTGGGACGACGGATGAAAGTGGGCTAAACCAGGCGACGTTTGGCATCAACTCATATGAAGCG
AAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4099.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis