Browse Element(s) Details


Os.5908.1.S1_at

Description gb:AK105603.1
DB_XREF= gi:32990812
TID=Os.5908.1
CNT=12
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.5908 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative arabinogalactan-like protein (OSJNBb0063G05.20), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-200-A09, full insert sequence.
FL= gb:AK105603.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4778011/11Fasciclin domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g47750NANA1+27644206..27648558Splicing factor U2AF 23 kDa subunit, putative, expressed
LOC_Os01g47760Os.11657.1.S1_at11/111+27652898..27653873glutaredoxin family protein, putative, expressed
LOC_Os01g47770Os.10221.1.S1_at11/111+27663108..27666183Nuclear movement protein, expressed
LOC_Os01g47780Os.5908.1.S1_at11/111+27667758..27668798Fasciclin domain containing protein, expressed
LOC_Os01g47790Os.35344.3.S1_x_at10/111+27672055..27678969transposon protein, putative, Mutator sub-class
LOC_Os01g47790Os.35344.18.S1_x_at10/111+27672055..27678969transposon protein, putative, Mutator sub-class
LOC_Os01g47790OsAffx.22940.5.S1_at7/111+27672055..27678969transposon protein, putative, Mutator sub-class
LOC_Os01g47790OsAffx.22940.5.S1_x_at5/111+27672055..27678969transposon protein, putative, Mutator sub-class
LOC_Os01g47800Os.32955.2.S1_x_at11/111+27684185..27690000expressed protein
LOC_Os01g47800Os.32955.1.A1_at11/111+27684185..27690000expressed protein
LOC_Os01g47810NANA1+27693165..27695552S-locus-like receptor protein kinase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0031225cellular_componentanchored to membrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5908.1.S1_at--363--1651Chr01:27668117..27668141 (25 bp)
AGCCCAAGAAGGGTGGCTCCACGGA
LOC_Os01g47780
Os.5908.1.S1_at--495--10791Chr01:27667997..27668021 (25 bp)
TTGTTGGCTGCCTCTTGTAAGACGG
LOC_Os01g47780
Os.5908.1.S1_at--957--4451Chr01:27667988..27668012 (25 bp)
GCCTCTTGTAAGACGGTGTACGGAC
LOC_Os01g47780
Os.5908.1.S1_at--568--9931Chr01:27667970..27667994 (25 bp)
TACGGACACGATGGTCGAGGAAGCT
LOC_Os01g47780
Os.5908.1.S1_at--607--6191Chr01:27667954..27667978 (25 bp)
GAGGAAGCTAGCCATGTGCATGCAT
LOC_Os01g47780
Os.5908.1.S1_at--521--4431Chr01:27667944..27667968 (25 bp)
GCCATGTGCATGCATTTCTTTTCTT
LOC_Os01g47780
Os.5908.1.S1_at--934--9571Chr01:27667885..27667909 (25 bp)
TCTTCCTCTCTCCATGTTTAAATTT
LOC_Os01g47780
Os.5908.1.S1_at--698--9531Chr01:27667821..27667845 (25 bp)
TCTTGGTGGTTTGTAATATTGGGCT
LOC_Os01g47780
Os.5908.1.S1_at--1152--11Chr01:27667804..27667828 (25 bp)
ATTGGGCTGTGTGATTGGAGTTTTC
LOC_Os01g47780
Os.5908.1.S1_at--85--31Chr01:27667791..27667815 (25 bp)
ATTGGAGTTTTCTGTCTGAGGCCGG
LOC_Os01g47780
Os.5908.1.S1_at--1160--9451Chr01:27667777..27667801 (25 bp)
TCTGAGGCCGGGATGTTAATAATGC
LOC_Os01g47780
Target Sequence 
AGCCCAAGAAGGGTGGCTCCACGGAGGCCGCCTCCGGCCCCGCCGGCGCGGAGGACGCCGAGCCCACGGGCGCCGCCAGC
GCCAGGGCCGTCGGCTGGGGCGTCGCCGGGCTCGCCGCCGTTGTTGGCTGCCTCTTGTAAGACGGTGTACGGACACGATG
GTCGAGGAAGCTAGCCATGTGCATGCATTTCTTTTCTTTTCTTTTTTTTTCCTTTTTTTCCTTTTCTTTCATTCTTCCTC
TCTCCATGTTTAAATTTATTTGATTTTGACTAGTTTGTTCTTTACATTATTCTTGTTCTTGGTGGTTTGTAATATTGGGC
TGTGTGATTGGAGTTTTCTGTCTGAGGCCGGGATGTTAATAATGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5908.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis