Browse Element(s) Details


Os.5930.1.S1_x_at

Description gb:CB619980
DB_XREF= gi:29614967
DB_XREF=OSIIEa04O06.r
CLONE=OSIIEa04O06
TID=Os.5930.1
CNT=3
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.5930 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g164901/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g16450Os.50874.1.S1_at9/112+9391343..9393827expressed protein
LOC_Os02g16460OsAffx.5632.1.S1_x_at2/112+9400982..9402637retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g16460OsAffx.5632.1.S1_at2/112+9400982..9402637retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g16470NANA2+9404825..9405634retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g16480OsAffx.24278.1.S1_at11/112+9407259..9407836hypothetical protein
LOC_Os02g16480OsAffx.24278.1.S1_x_at11/112+9407259..9407836hypothetical protein
LOC_Os02g16490Os.5930.1.S1_at1/112+9409105..9413550expressed protein
LOC_Os02g16490OsAffx.18631.1.A1_at1/112+9409105..9413550expressed protein
LOC_Os02g16490Os.5930.1.S1_x_at1/112+9409105..9413550expressed protein
LOC_Os02g16500Os.12412.1.S1_at11/112+9416886..9418700expressed protein
LOC_Os02g16510NANA2+9421771..9425121retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g16520NANA2+9427302..9428320retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5930.1.S1_x_at--652--4373Chr05:8355755..8355779 (25 bp)
CCAACAGTGACTTCGCCTTCAGGCG
NONE
Os.5930.1.S1_x_at--594--3272Chr05:8355756..8355780 (25 bp)
CAACAGTGACTTCGCCTTCAGGCGT
NONE
Os.5930.1.S1_x_at--691--1112Chr05:8355760..8355784 (25 bp)
AGTGACTTCGCCTTCAGGCGTGGTA
NONE
Os.5930.1.S1_x_at--324--7372Chr05:8355761..8355785 (25 bp)
GTGACTTCGCCTTCAGGCGTGGTAA
NONE
Os.5930.1.S1_x_at--879--8952Chr05:8355840..8355864 (25 bp)
TGAAAACCTTGTCCAATTCCTTGGA
NONE
Os.5930.1.S1_x_at--94--1752Chr05:8355845..8355869 (25 bp)
ACCTTGTCCAATTCCTTGGACGGAT
NONE
Os.5930.1.S1_x_at--866--4292Chr05:8355846..8355870 (25 bp)
CCTTGTCCAATTCCTTGGACGGATG
NONE
Os.5930.1.S1_x_at--714--10812Chr05:8355848..8355872 (25 bp)
TTGTCCAATTCCTTGGACGGATGAC
NONE
Os.5930.1.S1_x_at--284--8452Chr05:8355849..8355873 (25 bp)
TGTCCAATTCCTTGGACGGATGACG
NONE
Os.5930.1.S1_x_at--443--6111Chr09:21567068..21567092 (25 bp)
GAGGGCGTCGTTTTAGAGTATTCGT
NONE
Os.5930.1.S1_x_at--610--4032Chr05:8355911..8355935 (25 bp)
CGTTTTAGAGTATTCGTGTCGTGGT
NONE
Target Sequence 
CCAACAGTGACTTCGCCTTCAGGCGTGGTAACCCTCCTGAGGGCACTGTTGAGGTACCCATCCTCCCTCNGCAAGGAGCT
CTGGGTGAAAACCTTGTCCAATTCCTTGGACGGATGACGACGGCGTCTTTCGGCGTCGCAANCCTCGTGAGGGCGTCGTT
TTAGAGTATTCGTGTCGTGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5930.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis