Browse Element(s) Details


Os.5937.1.S1_at

Description gb:AY100694.1
DB_XREF= gi:25136294
TID=Os.5937.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.5937 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) expansin-like protein A mRNA, complete cds.
PROD=expansin-like protein A
FL= gb:AK102489.1 gb:AY100694.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2929010/11Rare lipoprotein A like double-psi beta-barrel containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g29250NANA7+17135559..17136441retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g29260NANA7+17137185..17141552retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g29270Os.35273.1.S1_at4/117+17142580..17142798expressed protein
LOC_Os07g29280NANA7+17157852..17158079hypothetical protein
LOC_Os07g29290Os.5937.1.S1_at10/117+17160571..17164004Rare lipoprotein A like double-psi beta-barrel containing protein, expressed
LOC_Os07g29300OsAffx.22328.1.S1_at11/117+17170999..17171888hypothetical protein
LOC_Os07g29310Os.37213.1.S1_at11/117+17184979..17185946Auxin responsive protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009664biological_processcell wall organization and biogenesis (sensu Magnoliophyta)
GO:0009826biological_processunidimensional cell growth
GO:0009828biological_processcell wall loosening (sensu Magnoliophyta)
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5937.1.S1_at--971--8511Chr07:17161112..17161136 (25 bp)
TGGACCCGTTTGGAGCATCGACCGG
LOC_Os07g29290
Os.5937.1.S1_at--814--5811Chr07:17161077..17161101 (25 bp)
GACCGCTTCAGTTCCGGGCTGTGGT
LOC_Os07g29290
Os.5937.1.S1_at--841--8751Chr07:17160978..17161002 (25 bp)
TGTACGACACCGGTGCGAGGATCGC
LOC_Os07g29290
Os.5937.1.S1_at--910--1071Chr07:17160943..17160967 (25 bp)
AGGGAAAGCTGCCTAGACTGCGCCA
LOC_Os07g29290
Os.5937.1.S1_at--202--9171Chr07:17160925..17160949 (25 bp)
TGCGCCACGCTGGACTGGAAGTGAA
LOC_Os07g29290
Os.5937.1.S1_at--809--9291Chr07:17160796..17160820 (25 bp)
TCCCCTTCCCTGTCAAAACAAAGAG
LOC_Os07g29290
Os.5937.1.S1_at--178--6492Chr04:28852322..28852361 (24 bp)
GATAGCTGTGATCTCCCTGTTTAGC
NONE
Os.5937.1.S1_at--937--8751NONE
TGTTTAGCCCCTTTGGATTTGGTCT
NONE
Os.5937.1.S1_at--976--8591Chr07:17160717..17160741 (25 bp)
TGGTCTCTTCTTCCAATATGCATGT
LOC_Os07g29290
Os.5937.1.S1_at--257--7431Chr07:17160694..17160718 (25 bp)
GTGTTCACTGAACCATGCATATGCA
LOC_Os07g29290
Os.5937.1.S1_at--889--6011Chr07:17160666..17160690 (25 bp)
GAGAGATGTGTCATCAGGATCTGAT
LOC_Os07g29290
Target Sequence 
TGGACCCGTTTGGAGCATCGACCGGGCCCCCAACGGACCGCTTCAGTTCCGGGCTGTGGTGACCGGTGGTTACGACGGGA
AGTGGGTCTGGGCCGACCGGGAGGTTCTTCCCGCCAACTGGCAGCCCGGCCAGGTGTACGACACCGGTGCGAGGATCGCC
GACGTGGCGAGGGAAAGCTGCCTAGACTGCGCCACGCTGGACTGGAAGTGAAAGGTGTNGCTAGANCCTGACGTATCTGN
GCACTGCAAANGACCAGGNTACATNGTAGANTACAGTCCTCNATAGGGNTGANAGGGACAGCGCTGGGGTTGGAAAAAAC
AGAGGCTCCCCTTCCCTGTCAAAACAAAGAGATACAATGTTTTTTATGGGGGATAGCTGTGATCTCCCTGTTTAGCCCCT
TTGGATTTGGTCTCTTCTTCCAATATGCATGTGTTCACTGAACCATGCATATGCATATGAGAGATGTGTCATCAGGATCT
GAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5937.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis