Browse Element(s) Details


Os.5952.2.S1_s_at

Description gb:AK105730.1
DB_XREF= gi:32990939
TID=Os.5952.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.5952 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative seryl-tRNA synthetase (B1144D11.29), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-201-H03, full insert sequence.
FL= gb:AK105730.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3783711/11Seryl-tRNA synthetase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g37810OsAffx.23546.1.S1_at11/111+21477308..21477697expressed protein
LOC_Os01g37820Os.38090.2.S1_x_at11/111+21478387..21482486expressed protein
LOC_Os01g37820Os.38090.1.S1_at11/111+21478387..21482486expressed protein
LOC_Os01g37825Os.6069.1.S1_at11/111+21488749..21494266peptidase M16 family protein, putative, expressed
LOC_Os01g37832OsAffx.11366.1.S1_at11/111+21494720..21499508GM14633p, putative, expressed
LOC_Os01g37832Os.13544.1.S1_x_at11/111+21494720..21499508GM14633p, putative, expressed
LOC_Os01g37837Os.5952.4.S1_x_at11/111+21502603..21506769Seryl-tRNA synthetase, putative, expressed
LOC_Os01g37837Os.5952.2.S1_s_at11/111+21502603..21506769Seryl-tRNA synthetase, putative, expressed
LOC_Os01g37842Os.54221.1.A1_at11/111+21508294..21510864expressed protein
LOC_Os01g37842OsAffx.11367.1.S1_x_at11/111+21508294..21510864expressed protein
LOC_Os01g37850Os.18128.1.S1_a_at11/111+21511789..21514271expressed protein
LOC_Os01g37860NANA1+21515576..21521235retrotransposon protein, putative, unclassified, expressed
LOC_Os01g37870Os.19155.1.S1_at11/111+21522279..21528594pentatricopeptide, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006434biological_processseryl-tRNA aminoacylation
GO:0007005biological_processmitochondrion organization and biogenesis
GO:0009658biological_processchloroplast organization and biogenesis
GO:0043039biological_processtRNA aminoacylation
GO:0005739cellular_componentmitochondrion
GO:0009507cellular_componentchloroplast
GO:0004828molecular_functionserine-tRNA ligase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5952.2.S1_s_at--295--2891Chr01:21506455..21506478 (24 bp)
AAGGGAGATGCTATCTGAGCTAGAT
LOC_Os01g37837
Os.5952.2.S1_s_at--661--9871Chr01:21506530..21506554 (25 bp)
TACTTCTAAAAAATGCGTTTGTTCA
LOC_Os01g37837
Os.5952.2.S1_s_at--511--1211Chr01:21506583..21506607 (25 bp)
AGTTTTGGCTCTCATTTGAGTGTAT
LOC_Os01g37837
Os.5952.2.S1_s_at--446--10411Chr01:21506585..21506609 (25 bp)
TTTTGGCTCTCATTTGAGTGTATTG
LOC_Os01g37837
Os.5952.2.S1_s_at--297--8731Chr01:21506620..21506644 (25 bp)
TGTCTGACCATGTACTTGCACAGTG
LOC_Os01g37837
Os.5952.2.S1_s_at--521--5851Chr01:21506625..21506649 (25 bp)
GACCATGTACTTGCACAGTGATATT
LOC_Os01g37837
Os.5952.2.S1_s_at--430--7011Chr01:21506631..21506655 (25 bp)
GTACTTGCACAGTGATATTCCGTAG
LOC_Os01g37837
Os.5952.2.S1_s_at--328--3631Chr01:21506634..21506658 (25 bp)
CTTGCACAGTGATATTCCGTAGAAT
LOC_Os01g37837
Os.5952.2.S1_s_at--863--10211Chr01:21506646..21506670 (25 bp)
TATTCCGTAGAATGTCTGGCTATCT
LOC_Os01g37837
Os.5952.2.S1_s_at--497--4231Chr01:21506650..21506674 (25 bp)
CCGTAGAATGTCTGGCTATCTTGGA
LOC_Os01g37837
Os.5952.2.S1_s_at--487--1471Chr01:21506654..21506678 (25 bp)
AGAATGTCTGGCTATCTTGGACATG
LOC_Os01g37837
Target Sequence 
AAGGGAGATGCTATCTGAGCTAGATGAGGAATCAACAAAGATTTTCTTGCTTTCAGACACTACTGGATGTTATTCATACT
TCTAAAAAATGCGTTTGTTCAGAACTTGTATCAATGATCATGATGTTACAGTTTTGGCTCTCATTTGAGTGTATTGATTA
GCACAATGTCTGACCATGTACTTGCACAGTGATATTCCGTAGAATGTCTGGCTATCTTGGACATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5952.2.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis