Browse Element(s) Details


Os.5952.4.S1_x_at

Description gb:NM_193493.1
DB_XREF= gi:34914069
GEN=B1144D11.29
TID=Os.5952.4
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.5952 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative seryl-tRNA synthetase (B1144D11.29), mRNA.
PROD=putative seryl-tRNA synthetase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3783711/11Seryl-tRNA synthetase, putative, expressed
LOC_Os03g101907/11Seryl-tRNA synthetase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g37810OsAffx.23546.1.S1_at11/111+21477308..21477697expressed protein
LOC_Os01g37820Os.38090.2.S1_x_at11/111+21478387..21482486expressed protein
LOC_Os01g37820Os.38090.1.S1_at11/111+21478387..21482486expressed protein
LOC_Os01g37825Os.6069.1.S1_at11/111+21488749..21494266peptidase M16 family protein, putative, expressed
LOC_Os01g37832OsAffx.11366.1.S1_at11/111+21494720..21499508GM14633p, putative, expressed
LOC_Os01g37832Os.13544.1.S1_x_at11/111+21494720..21499508GM14633p, putative, expressed
LOC_Os01g37837Os.5952.4.S1_x_at11/111+21502603..21506769Seryl-tRNA synthetase, putative, expressed
LOC_Os01g37837Os.5952.2.S1_s_at11/111+21502603..21506769Seryl-tRNA synthetase, putative, expressed
LOC_Os01g37842Os.54221.1.A1_at11/111+21508294..21510864expressed protein
LOC_Os01g37842OsAffx.11367.1.S1_x_at11/111+21508294..21510864expressed protein
LOC_Os01g37850Os.18128.1.S1_a_at11/111+21511789..21514271expressed protein
LOC_Os01g37860NANA1+21515576..21521235retrotransposon protein, putative, unclassified, expressed
LOC_Os01g37870Os.19155.1.S1_at11/111+21522279..21528594pentatricopeptide, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006434biological_processseryl-tRNA aminoacylation
GO:0007005biological_processmitochondrion organization and biogenesis
GO:0009658biological_processchloroplast organization and biogenesis
GO:0043039biological_processtRNA aminoacylation
GO:0005739cellular_componentmitochondrion
GO:0009507cellular_componentchloroplast
GO:0004828molecular_functionserine-tRNA ligase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5952.4.S1_x_at--1141--6491Chr01:21505604..21505628 (25 bp)
GATATGCTGGATATTCCACCTGCTT
LOC_Os01g37837
Os.5952.4.S1_x_at--25--2892Chr03:5148695..5148718 (24 bp)
AAGGGACACGGCTGGTATCTTCAGA
LOC_Os03g10190
Os.5952.4.S1_x_at--1155--6891Chr01:21505667..21505691 (25 bp)
GTATCTTCAGAGTCCACCAATTCGA
LOC_Os01g37837
Os.5952.4.S1_x_at--31--991Chr01:21505880..21505901 (22 bp)
AGGAGATTGGCCTACCGTACCAACT
LOC_Os01g37837
Os.5952.4.S1_x_at--1064--7312Chr03:5148960..5148984 (25 bp)
GTGCTCTTAATGATGCTGCAGCTAA
LOC_Os03g10190
Os.5952.4.S1_x_at--725--1452Chr03:5148997..5149021 (25 bp)
AGAAGCATGGTTCCCTGCATCAAAA
LOC_Os03g10190
Os.5952.4.S1_x_at--1086--10052Chr03:5149028..5149051 (24 bp)
TAGGGAATTAGTGTCCTGCTCAAAT
LOC_Os03g10190
Os.5952.4.S1_x_at--316--8911Chr01:21506150..21506174 (25 bp)
TGAGCAATCCAAGCAATTCGTTCAT
LOC_Os01g37837
Os.5952.4.S1_x_at--1124--52Chr03:5149230..5149254 (25 bp)
ATTGACTGCCACTGAGAGGACCCTT
LOC_Os03g10190
Os.5952.4.S1_x_at--111--6192Chr03:5149245..5149269 (25 bp)
GAGGACCCTTTGCTGTATTTTGGAG
LOC_Os03g10190
Os.5952.4.S1_x_at--472--6532Chr03:5149333..5149357 (25 bp)
GATTTCCTTCCTTTCAAGCTGGATA
LOC_Os03g10190
Target Sequence 
GATATGCTGGATATTCCACCTGCTTCCGGAAAGAAGCTGGTTCACATGGAAGGGACACGGCTGGTATCTTCAGAGTCCAC
CAATTCGAAAAGATTGAGCAATTCTGTGTTACAAGTCCAAATGACAATGAATCCTGGGAGATGCATGAAGAAATGATAAA
AAATTCAGAAGATTTCTACAAGGAGATTGGCCTACCGTACCAACTTGTCTCCATTGTGTCTGGTGCTCTTAATGATGCTG
CAGCTAAGAAGTATGATTTAGAAGCATGGTTCCCTGCATCAAAAACCTATAGGGAATTAGTGTCCTGCTCAAATTGCACA
GATTTTCAAGCAAGGAGACTTGGTATAGGTTATGGCCAGAAAAAGAATGATGAGCAATCCAAGCAATTCGTTCATATGTT
GAACTCAACATTGACTGCCACTGAGAGGACCCTTTGCTGTATTTTGGAGAACTTCCAGAAGGAGAATGGTGTCGAAGTTC
CAAAAGCATTGCAGCCTTACATGGGTGGAATCGATTTCCTTCCTTTCAAGCTGGATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5952.4.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis