Browse Element(s) Details


Os.5959.1.S1_at

Description gb:AK074014.1
DB_XREF= gi:32984037
TID=Os.5959.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.5959 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033073M17, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033073M17, full insert sequence.
FL= gb:AK074014.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5056011/11RRM-containing protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g50510OsAffx.13440.1.S1_at10/113+28788451..28793744Threonine dehydratase biosynthetic, chloroplast precursor, putative, expressed
LOC_Os03g50520OsAffx.13442.2.S1_at11/113+28796019..28801712Dynamin-related protein 1C, putative, expressed
LOC_Os03g50520Os.38545.1.S1_s_at11/113+28796019..28801712Dynamin-related protein 1C, putative, expressed
LOC_Os03g50520Os.9442.1.S1_s_at11/113+28796019..28801712Dynamin-related protein 1C, putative, expressed
LOC_Os03g50530Os.51052.1.S1_at11/113+28801324..28802828expressed protein
LOC_Os03g50540Os.12117.1.S1_at11/113+28804859..28809309NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial precursor, putative, expressed
LOC_Os03g50550NANA3+28811030..28812067Protein kinase domain containing protein
LOC_Os03g50560Os.5959.1.S1_at11/113+28818239..28822369RRM-containing protein, putative, expressed
LOC_Os03g50570OsAffx.13444.1.S1_at10/113+28824751..28830027expressed protein
LOC_Os03g50570OsAffx.19786.1.S1_at3/113+28824751..28830027expressed protein
LOC_Os03g50570OsAffx.32242.1.S1_at2/113+28824751..28830027expressed protein
LOC_Os03g50570OsAffx.32330.1.S1_x_at2/113+28824751..28830027expressed protein
LOC_Os03g50570OsAffx.23830.1.S1_at1/113+28824751..28830027expressed protein
LOC_Os03g50570Os.29056.1.S1_s_at1/113+28824751..28830027expressed protein
LOC_Os03g50580NANA3+28831688..28832032expressed protein
LOC_Os03g50590OsAffx.25660.1.S1_at11/113+28839634..28840107expressed protein
LOC_Os03g50600NANA3+28845225..28845605hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0003676molecular_functionnucleic acid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5959.1.S1_at--376--911Chr03:28818789..28818813 (25 bp)
AGGCGGCAGGTGACATGAGCTCCAT
LOC_Os03g50560
Os.5959.1.S1_at--571--3551Chr03:28818673..28818697 (25 bp)
CATCTTGATGAACCCTCTTCATGGG
LOC_Os03g50560
Os.5959.1.S1_at--260--5871Chr03:28818649..28818673 (25 bp)
GAGCCTGCAGTTCTTCCGTTGGAAT
LOC_Os03g50560
Os.5959.1.S1_at--181--5411Chr03:28818611..28818635 (25 bp)
GAAGCTCCAGGCTGTGTGATCTGCA
LOC_Os03g50560
Os.5959.1.S1_at--728--2971Chr03:28818580..28818604 (25 bp)
AATGGTGGTCGTTTCTCTGCACGTC
LOC_Os03g50560
Os.5959.1.S1_at--829--1451Chr03:28818532..28818556 (25 bp)
AGAAGATTGTTTTTCACCGCTGCAC
LOC_Os03g50560
Os.5959.1.S1_at--341--792Chr11:16729700..16730164 (25 bp)
ATGTGTTTTCTTCCAGCTTTGTTAT
NONE
Os.5959.1.S1_at--1063--2931Chr03:28818414..28818438 (25 bp)
AAGGCTTACTTGTTCAGTGTTAGAC
LOC_Os03g50560
Os.5959.1.S1_at--437--2331Chr03:28818380..28818404 (25 bp)
AAAGTTGTTCCAGACTTCCAGGCAT
LOC_Os03g50560
Os.5959.1.S1_at--411--10671Chr03:28818365..28818389 (25 bp)
TTCCAGGCATACCTCTTGTTATGGT
LOC_Os03g50560
Os.5959.1.S1_at--378--5491Chr03:28818339..28818363 (25 bp)
GAACATGTTTCTGTGAGTTATCTCA
LOC_Os03g50560
Target Sequence 
AGGCGGCAGGTGACATGAGCTCCATGACCAAAGATAAGGTAGACAGGGCCGAAGAGGAGAGGAAAGCGATCATGTGGGAA
GAGAGGAATGGGCTTGTAAGTGATTATGCCAAGATCCATCTTGATGAACCCTCTTCATGGGAGCCTGCAGTTCTTCCGTT
GGAATCTGTGGATGAGCAGAAGCTCCAGGCTGTGTGATCTGCACAATCCAATGGTGGTCGTTTCTCTGCACGTCATTCTT
TTGTTCATGTCCAATATAGAAGATTGTTTTTCACCGCTGCACGGTAGCAAAAATATTGAGCTTATTGCCTATAGTATGAT
GTAAATTTTAGAAATTCCCCATGTGTTTTCTTCCAGCTTTGTTATAGACCNCTGAAAGGCTTACTTGTTCAGTGTTAGAC
ATGGAAATGAAAGTTGTTCCAGACTTCCAGGCATACCTCTTGTTATGGTAGAACATGTTTCTGTGAGTTATCTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5959.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis