Browse Element(s) Details


Os.5994.1.A1_at

Description gb:AK071820.1
DB_XREF= gi:32981843
TID=Os.5994.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.5994 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023114B18, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023114B18, full insert sequence.
FL= gb:AK071820.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0345010/11Golgi SNARE 12 protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g03400Os.53067.1.S1_at11/112+1379250..1382389Microtubule associated protein containing protein, expressed
LOC_Os02g03410Os.2355.1.S1_at11/112+1387873..1394276Protein kinase domain containing protein, expressed
LOC_Os02g03420Os.54336.1.S1_at11/112+1394865..1397141PPR868-14, putative, expressed
LOC_Os02g03430Os.51630.1.A1_at11/112+1397698..1398983expressed protein
LOC_Os02g03440OsAffx.11876.1.S1_at10/112+1399613..1401222Sm protein, expressed
LOC_Os02g03450Os.5994.1.A1_at10/112+1402582..1404558Golgi SNARE 12 protein, putative, expressed
LOC_Os02g03460OsAffx.11877.1.S1_at11/112+1406098..1409346phosphatidate cytidylyltransferase family protein, expressed
LOC_Os02g03470Os.54187.1.A1_at11/112+1412107..1416005expressed protein
LOC_Os02g03470Os.27739.1.A1_at11/112+1412107..1416005expressed protein
LOC_Os02g03470Os.54187.1.A1_x_at11/112+1412107..1416005expressed protein
LOC_Os02g03480OsAffx.24082.1.S1_s_at11/112+1416610..1417705expressed protein
LOC_Os02g03490OsAffx.24083.1.S1_x_at11/112+1420014..1420997expressed protein
LOC_Os02g03490Os.10395.1.S1_s_at9/112+1420014..1420997expressed protein
LOC_Os02g03500Os.10395.1.S1_s_at9/112+1423747..1424390expressed protein
LOC_Os02g03510Os.11067.1.S1_at11/112+1427398..1428118expressed protein
LOC_Os02g03510Os.10395.1.S1_s_at9/112+1427398..1428118expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006891biological_processintra-Golgi vesicle-mediated transport
GO:0006944biological_processmembrane fusion
GO:0016021cellular_componentintegral to membrane
GO:0000149molecular_functionSNARE binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5994.1.A1_at--144--771Chr02:1403342..1403366 (25 bp)
ATGTCGCCGAGGGTGCATTTGCTCA
LOC_Os02g03450
Os.5994.1.A1_at--519--2891Chr02:1403883..1403907 (25 bp)
AAGGGTAGCCCTTTCCAATCAGAGG
LOC_Os02g03450
Os.5994.1.A1_at--93--951Chr02:1404196..1404220 (25 bp)
AGGACACTATCATCCTTTCAGCAGT
LOC_Os02g03450
Os.5994.1.A1_at--183--8431Chr02:1404227..1404251 (25 bp)
GGCCTGCACCATCTTTTTGATTATT
LOC_Os02g03450
Os.5994.1.A1_at--143--4891Chr02:1404257..1404281 (25 bp)
GCTTTCGAAATGATGGTTGTCTCCA
LOC_Os02g03450
Os.5994.1.A1_at--338--5511Chr02:1404282..1404306 (25 bp)
GAAAATCTCACCGTGAAGGCTTCCC
LOC_Os02g03450
Os.5994.1.A1_at--1041--9131Chr02:1404310..1404334 (25 bp)
TGCGCAGAATCGCTGATACCAGATG
LOC_Os02g03450
Os.5994.1.A1_at--833--6011Chr02:1404386..1404410 (25 bp)
GAGAGATCGGATTCTTCAGCTTTTA
LOC_Os02g03450
Os.5994.1.A1_at--521--10691Chr02:1404416..1404440 (25 bp)
TTGCCTTTGATATATACTCCTACCT
LOC_Os02g03450
Os.5994.1.A1_at--748--6051Chr02:1404449..1404473 (25 bp)
GAGATTAACCTGTCCTACATGTACA
LOC_Os02g03450
Os.5994.1.A1_at--516--2691Chr02:1404537..1404561 (25 bp)
AAGCTGATGCTCTTTTTGTGATAAA
NONE
Target Sequence 
ATGTCGCCGAGGGTGCATTTGCTCAGGGAGAGGGCCTCGATTCATGGCAGCATTAACCAGATTGATGAGGTAATTGGCCA
AGCTCAGAGCACAAGGGTAGCCCTTTCCAATCAGAGGGCATTGTTTGGGGATGTTCAAGGAAAAGTCAAGCAGTTGGGTG
AAAAGTTCCCTGTTATTAGAGGACTACTTGGTGCCATCAAGAGGAAGAAATCAAAGGACACTATCATCCTTTCAGCAGTG
ATCGCGGCCTGCACCATCTTTTTGATTATTTACTGGCTTTCGAAATGATGGTTGTCTCCAGAAAATCTCACCGTGAAGGC
TTCCCCTCTGCGCAGAATCGCTGATACCAGATGACACGATAAGACTTGGTAGTATGTTTCATTTGTTAGGCTAAGAGGAG
GAATGAGAGATCGGATTCTTCAGCTTTTATCAATTTGCCTTTGATATATACTCCTACCTTGTATTTGGAGATTAACCTGT
CCTACATGTACAGTACAGAGCAATTTTGCTTTCCAAAGTAACTTGTCTGGCTGGCTGAGNAAATATGATACAATCAAGCT
GATGCTCTTTTTGTGATAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5994.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis