Browse Element(s) Details


Os.6009.3.S1_a_at

Description gb:AK060527.1
DB_XREF= gi:32970545
TID=Os.6009.3
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.6009 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033075D23, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-020-F02, full insert sequence.
FL= gb:AK060527.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0847011/11AP2 domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g08430Os.47816.1.A1_at11/113+4306856..4315342SacI homology domain containing protein, expressed
LOC_Os03g08430Os.28416.1.S1_at10/113+4306856..4315342SacI homology domain containing protein, expressed
LOC_Os03g08440Os.10138.2.S1_a_at11/113+4315859..431806540S ribosomal protein SA, putative, expressed
LOC_Os03g08450Os.48055.1.S1_at11/113+4318567..4321853Eukaryotic translation initiation factor 3 subunit 11 family protein, expressed
LOC_Os03g08460Os.11120.1.S1_at11/113+4322842..4324818AP2 domain containing protein, expressed
LOC_Os03g08470Os.6009.3.S1_a_at11/113+4327853..4329648AP2 domain containing protein, expressed
LOC_Os03g08480Os.10398.1.S1_at11/113+4336420..4339667SAP-like protein BP-73, putative, expressed
LOC_Os03g08480Os.10398.1.S2_at3/113+4336420..4339667SAP-like protein BP-73, putative, expressed
LOC_Os03g08490Os.23028.1.S1_s_at11/113+4346390..4347501AP2 domain containing protein, expressed
LOC_Os03g08500Os.12889.1.S1_x_at11/113+4351353..4352577AP2 domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6009.3.S1_a_at--865--691Chr03:4328725..4328749 (25 bp)
ATGATGACGAGCTCCTTCACCGACA
LOC_Os03g08470
Os.6009.3.S1_a_at--102--5771Chr03:4328647..4328671 (25 bp)
GACGTCGACTCGTCCGAGGGCAGCG
LOC_Os03g08470
Os.6009.3.S1_a_at--1159--5051Chr03:4328613..4328637 (25 bp)
GCAGCGACACGCTGGGTTTCACCGA
LOC_Os03g08470
Os.6009.3.S1_a_at--123--1871Chr03:4328589..4328613 (25 bp)
ACGAGCTGGAGTTCGACCCGTTCAT
LOC_Os03g08470
Os.6009.3.S1_a_at--794--6691Chr03:4328579..4328603 (25 bp)
GTTCGACCCGTTCATGCTGTTCCAG
LOC_Os03g08470
Os.6009.3.S1_a_at--1030--2471Chr03:4328497..4328521 (25 bp)
AACAGCGCGAACACCGACATGAACG
LOC_Os03g08470
Os.6009.3.S1_a_at--975--4231Chr03:4328472..4328496 (25 bp)
CCGGCGTCAACCTGTGGAGCTTCGA
LOC_Os03g08470
Os.6009.3.S1_a_at--179--9691Chr03:4328466..4328490 (25 bp)
TCAACCTGTGGAGCTTCGACGACTT
LOC_Os03g08470
Os.6009.3.S1_a_at--1005--8651Chr03:4328460..4328484 (25 bp)
TGTGGAGCTTCGACGACTTCCCAAT
LOC_Os03g08470
Os.6009.3.S1_a_at--946--4871Chr03:4328454..4328478 (25 bp)
GCTTCGACGACTTCCCAATCGACGG
LOC_Os03g08470
Os.6009.3.S1_a_at--413--9271Chr03:4328411..4328435 (25 bp)
TCCTCCATTGATGCAGTTTGTGCAC
LOC_Os03g08470
Target Sequence 
ATGATGACGAGCTCCTTCACCGACAGCGTCGCCACGTCGGAGTCCGGCGGGAGCCCCGCCAAGAAGGCGAGGTCCGACGA
CGTCGACTCGTCCGAGGGCAGCGTCGGCGGCGGCAGCGACACGCTGGGTTTCACCGACGAGCTGGAGTTCGACCCGTTCA
TGCTGTTCCAGCTCCCCTACTCCGACGGCTACGAGTCCATCGACAGCCTCTTCGCCGCCGGCGACGCCAACAGCGCGAAC
ACCGACATGAACGCCGGCGTCAACCTGTGGAGCTTCGACGACTTCCCAATCGACGGCGCCCTTTTCTGATGTACTCCTCC
ATTGATGCAGTTTGTGCAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6009.3.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis