Browse Element(s) Details


Os.6014.2.S1_at

Description gb:BI805418
DB_XREF= gi:15852622
DB_XREF=S038A04
CLONE=S038A04
TID=Os.6014.2
CNT=8
FEA=mRNA
TIER=ConsEnd
STK=2
UG=Os.6014 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative endo-1,4-beta-xylanase X-1 (OSJNBa0083M16.27), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0430011/11endo-1,4-beta-xylanase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g04260Os.10829.1.S1_at11/111+1885327..1889100Delta-7-sterol-C5, putative, expressed
LOC_Os01g04260Os.10829.2.S1_x_at11/111+1885327..1889100Delta-7-sterol-C5, putative, expressed
LOC_Os01g04270OsAffx.1928.1.S1_s_at11/111+1893879..1894118hypothetical protein
LOC_Os01g04270OsAffx.1928.1.S1_at11/111+1893879..1894118hypothetical protein
LOC_Os01g04280Os.28514.1.S1_at11/111+1899538..1902042calmodulin-binding protein, putative, expressed
LOC_Os01g04290Os.36438.1.S1_at5/111+1903780..1906469endo-1,4-beta-xylanase, putative
LOC_Os01g04290OsAffx.14829.2.S1_x_at1/111+1903780..1906469endo-1,4-beta-xylanase, putative
LOC_Os01g04300Os.6014.2.S1_at11/111+1909419..1911877endo-1,4-beta-xylanase, putative, expressed
LOC_Os01g04300Os.6014.2.S1_x_at11/111+1909419..1911877endo-1,4-beta-xylanase, putative, expressed
LOC_Os01g04300OsAffx.14829.2.S1_x_at1/111+1909419..1911877endo-1,4-beta-xylanase, putative, expressed
LOC_Os01g04310NANA1+1916551..1917233transposon protein, putative, unclassified
LOC_Os01g04320OsAffx.10903.2.S1_at11/111+1922127..1923305transposon protein, putative, unclassified
LOC_Os01g04330Os.36767.1.S1_at11/111+1927818..1928706EF hand family protein, expressed
LOC_Os01g04340Os.36328.1.S1_at11/111+1930919..193172616.9 kDa class I heat shock protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0004553molecular_functionhydrolase activity, hydrolyzing O-glycosyl compounds
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6014.2.S1_at--840--1891Chr01:1909962..1909986 (25 bp)
ACGTCTGCGAGTCTGACGTCGACCT
LOC_Os01g04300
Os.6014.2.S1_at--638--9491Chr01:1909959..1909983 (25 bp)
TCTGCGAGTCTGACGTCGACCTCCG
LOC_Os01g04300
Os.6014.2.S1_at--393--1091Chr01:1909881..1909905 (25 bp)
AGGGCGTCATGTTCTGGGGTTTCAT
LOC_Os01g04300
Os.6014.2.S1_at--78--4491Chr01:1909795..1909819 (25 bp)
GCCGGCGAGAGGTTCATAGATCTCC
LOC_Os01g04300
Os.6014.2.S1_at--333--1331Chr01:1909788..1909812 (25 bp)
AGAGGTTCATAGATCTCCGGCGGGA
LOC_Os01g04300
Os.6014.2.S1_at--1012--7611Chr01:1909632..1909656 (25 bp)
GGGACACCCCTCTTGTGCTGGATAT
LOC_Os01g04300
Os.6014.2.S1_at--228--1791Chr01:1909627..1909651 (25 bp)
ACCCCTCTTGTGCTGGATATGGACG
LOC_Os01g04300
Os.6014.2.S1_at--1006--4291Chr01:1909624..1909648 (25 bp)
CCTCTTGTGCTGGATATGGACGTCT
LOC_Os01g04300
Os.6014.2.S1_at--851--3611Chr01:1909621..1909645 (25 bp)
CTTGTGCTGGATATGGACGTCTGAC
LOC_Os01g04300
Os.6014.2.S1_at--1081--7291Chr01:1909618..1909642 (25 bp)
GTGCTGGATATGGACGTCTGACGAT
LOC_Os01g04300
Os.6014.2.S1_at--1125--251Chr01:1909611..1909635 (25 bp)
ATATGGACGTCTGACGATTACTTCC
LOC_Os01g04300
Target Sequence 
ACGTCTGCGAGTCTGACGTCGACCTCCGCGCCGACGACCTCGAGGTGGTGCTCCGGGAGGCGTACGCGCACCCGGCCGTC
GAGGGCGTCATGTTCTGGGGTTTCATGCAGGGCCACATGTGGCGCCAGGACGCCTGCCTCGTCAACTCCGACGGCACCGT
CAACGACGCCGGCGAGAGGTTCATAGATCTCCGGCGGGAGTGGACGTCGCACGCGCGCGGCCACATCGACGGCGACGGCC
ACTTCAAGTTCAGGGGCTTCCACGGCACGTACGTCGTGCAGCTCGCGACGGCGACGGGGAAGATGCACAAGACGTTCACC
GTGGAGAAGGGGGACACCCCTCTTGTGCTGGATATGGACGTCTGACGATTACTTCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6014.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis