Browse Element(s) Details


Os.6055.3.S1_x_at

Description gb:D21294.1
DB_XREF= gi:429013
TID=Os.6055.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.6055 (NCBI UniGene Cluster)
UG_TITLE=SS420 mRNA for pyrophosphate-fructose 6-phosphate 1-phosphotransferase, partial sequence
DEF=Oryza sativa SS420 mRNA for pyrophosphate-fructose 6-phosphate 1-phosphotransferase, partial sequence.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2572010/11Pyrophosphate-fructose 6-phosphate 1-phosphotransferase alpha subunit, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g25700Os.15734.1.S1_at11/118+15504916..15509053expressed protein
LOC_Os08g25710OsAffx.17155.1.S1_x_at11/118+15509564..15513097cellulose synthase D, putative, expressed
LOC_Os08g25710OsAffx.17155.1.S1_at11/118+15509564..15513097cellulose synthase D, putative, expressed
LOC_Os08g25720Os.6055.1.S1_at11/118+15525650..15531026Pyrophosphate-fructose 6-phosphate 1-phosphotransferase alpha subunit, putative, expressed
LOC_Os08g25720Os.6055.3.S1_x_at10/118+15525650..15531026Pyrophosphate-fructose 6-phosphate 1-phosphotransferase alpha subunit, putative, expressed
LOC_Os08g25734OsAffx.29350.1.S1_at11/118+15533366..15539740Glucose-1-phosphate adenylyltransferase small subunit, chloroplast precursor, putative, expressed
LOC_Os08g25734Os.178.1.S1_a_at11/118+15533366..15539740Glucose-1-phosphate adenylyltransferase small subunit, chloroplast precursor, putative, expressed
LOC_Os08g25750NANA8+15543967..15547038retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g25760OsAffx.10633.1.S1_at5/118+15547807..15550262retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g25770OsAffx.17156.1.S1_at10/118+15554569..15555717hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006096biological_processglycolysis
GO:0005945cellular_component6-phosphofructokinase complex
GO:0003872molecular_function6-phosphofructokinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6055.3.S1_x_at--991--1411NONE
AGAAATGTATGCTCTGCTTCAGGAA
NONE
Os.6055.3.S1_x_at--993--3071Chr08:15528649..15528673 (25 bp)
AATCAATATCCTCCACAACAACAAT
LOC_Os08g25720
Os.6055.3.S1_x_at--1--2471Chr08:15528665..15528689 (25 bp)
AACAACAATGTTCCTGTGGCAGAGA
LOC_Os08g25720
Os.6055.3.S1_x_at--123--8271Chr08:15528682..15528706 (25 bp)
GGCAGAGATGCCATCACAACTGTCT
LOC_Os08g25720
Os.6055.3.S1_x_at--126--2211Chr08:15528697..15528721 (25 bp)
ACAACTGTCTCCTTGGGCAGCTGCG
LOC_Os08g25720
Os.6055.3.S1_x_at--42--9592Chr08:15528732..15528756 (25 bp)
TCTTGCCACCCTTCATCAGAAGAGA
LOC_Os08g25720
Os.6055.3.S1_x_at--76--5911Chr08:15528840..15528863 (24 bp)
GAGCTGCTGCTCCATCAAGAATCAG
LOC_Os08g25720
Os.6055.3.S1_x_at--92--5251Chr08:15528857..15528881 (25 bp)
GAATCAGACAACTCTGCCCAGCTGT
LOC_Os08g25720
Os.6055.3.S1_x_at--976--4171Chr08:15528873..15528981 (25 bp)
CCCAGCTGTCCCAGATTGATACTGA
LOC_Os08g25720
Os.6055.3.S1_x_at--147--6491Chr08:15528974..15528998 (25 bp)
GATACTGAGCAATTGTTGGCCCACT
LOC_Os08g25720
Os.6055.3.S1_x_at--813--6611Chr08:15528988..15529012 (25 bp)
GTTGGCCCACTTAGTAGAAGCAGAA
LOC_Os08g25720
Target Sequence 
AGAAATGTATGCTCTGCTTCAGGAAATCAATATCCTCCACAACAACAATGTTCCTGTGGCAGAGATGCCATCACAACTGT
CTCCTTGGGCAGCTGCGCTGTTCCAGTTCTTGCCACCCTTCATCAGAAGAGAGCTGCTGCTCCATCAAGAATCAGACAAC
TCTGCCCAGCTGTCCCAGATTGATACTGAGCAATTGTTGGCCCACTTAGTAGAAGCAGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6055.3.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis