Browse Element(s) Details


Os.6080.1.S1_at

Description gb:AK063692.1
DB_XREF= gi:32973710
TID=Os.6080.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.6080 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-119-F10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-119-F10, full insert sequence.
FL= gb:AK063692.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0438011/11Glycine cleavage T-protein containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g04340NANA6+1843992..1847536expressed protein
LOC_Os06g04350OsAffx.4717.1.S1_at10/116+1849165..1852812expressed protein
LOC_Os06g04350Os.51695.1.S1_at2/116+1849165..1852812expressed protein
LOC_Os06g04360Os.51695.1.S1_at10/116+1856524..1860054expressed protein
LOC_Os06g04370Os.54353.1.S1_at11/116+1863558..1867212leucine-rich repeat transmembrane protein kinase, putative, expressed
LOC_Os06g04380Os.6080.1.S1_at11/116+1871647..1874910Glycine cleavage T-protein containing protein, expressed
LOC_Os06g04390Os.11342.1.S1_at11/116+1875621..1879228expressed protein
LOC_Os06g04390OsAffx.16554.1.S1_at1/116+1875621..1879228expressed protein
LOC_Os06g04400OsAffx.27453.1.S1_at11/116+1883183..1883512hypothetical protein
LOC_Os06g04410OsAffx.4718.1.S1_at11/116+1890152..1891189hypothetical protein
LOC_Os06g04420OsAffx.4719.1.S1_at11/116+1892930..1893307Lipoxygenase 2, putative
LOC_Os06g04430OsAffx.15260.1.S1_at11/116+1896434..1896853hypothetical protein
LOC_Os06g04440OsAffx.27454.1.S1_at11/116+1898595..1899626hypothetical protein
LOC_Os06g04450Os.7031.1.S1_at11/116+1899883..1907931SNARE-interacting protein KEULE, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0004047molecular_functionaminomethyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6080.1.S1_at--945--2531Chr06:1872184..1872208 (25 bp)
AACTCAAGCAGGCTGTTGCTCCAGG
LOC_Os06g04380
Os.6080.1.S1_at--929--1211Chr06:1872117..1872141 (25 bp)
AGTTAACACTGCTCTTGGCAGCCGT
LOC_Os06g04380
Os.6080.1.S1_at--165--10111Chr06:1872090..1872114 (25 bp)
TATGGGCCTGCTGAGACTTGAAGAA
LOC_Os06g04380
Os.6080.1.S1_at--72--2351Chr06:1872002..1872026 (25 bp)
AAACCAGACTGGTGGCCGGTTGAGT
LOC_Os06g04380
Os.6080.1.S1_at--644--3291Chr06:1871957..1871981 (25 bp)
CAAAGTGCTGTTGCTTGACATCATA
LOC_Os06g04380
Os.6080.1.S1_at--926--3411Chr06:1871928..1871952 (25 bp)
CAGAATGTTCAGTTCCTCACTTGAA
LOC_Os06g04380
Os.6080.1.S1_at--591--6571Chr06:1871857..1871881 (25 bp)
GATTCCGTTACGGACCTTTCAGAAT
LOC_Os06g04380
Os.6080.1.S1_at--920--6191Chr06:1871829..1871853 (25 bp)
GAGGCAATCAGAGCAATTTCAGTTT
LOC_Os06g04380
Os.6080.1.S1_at--292--5071Chr06:1871803..1871827 (25 bp)
GCAGCTTTTGCTTATGTTCTCAGTT
LOC_Os06g04380
Os.6080.1.S1_at--860--3771Chr06:1871707..1871731 (25 bp)
CTCTCCACTTGTATCGACCATAAAT
LOC_Os06g04380
Os.6080.1.S1_at--840--7371Chr06:1871680..1871704 (25 bp)
GTGACTGTACATGACCAAACCCTGA
LOC_Os06g04380
Target Sequence 
AACTCAAGCAGGCTGTTGCTCCAGGCTCAGAAGTCGTGGACAAGGAGTCTGGCAAGAAAATCGGTACAGTTAACACTGCT
CTTGGCAGCCGTGGTATGGGCCTGCTGAGACTTGAAGAAGCCCTGAAGCAAAATTCAAGCCTTGCCATCAAGGATAATAG
GGATGTGAGAGTTAAGGNCGATCAAACCAGACTGGTGGCCGGTTGAGTGGACACAGATGCTTGAGCAGCAAAGTGCTGTT
GCTTGACATCATAAGTTCAGAATGTTCAGTTCCTCACTTGAAATATCCAGTGAAGTTTTGGAGAGTTTAAAGCCGAAAAC
TAATACAGGATTCCGTTACGGACCTTTCAGAATTCAGAGGCAATCAGAGCAATTTCAGTTTAGCAGCTTTTGCTTATGTT
CTCAGTTTAACAATTGACACAGTTACTTGATCATGTTGTCTGATGTATGAAGGCAGAGACTGTTTTGTTTTCTCTGTCCT
CTCCACTTGTATCGACCATAAATAAGTGACTGTACATGACCAAACCCTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6080.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis