Browse Element(s) Details


Os.6151.1.S1_at

Description gb:AK065800.1
DB_XREF= gi:32975818
TID=Os.6151.1
CNT=16
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.6151 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033138E22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013039B12, full insert sequence.
FL= gb:AK065800.1 gb:AK103731.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4171011/11FHA domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g41650Os.53468.1.S1_at11/118+26168245..26169036expressed protein
LOC_Os08g41660OsAffx.29626.1.S1_at11/118+26171295..26171876hypothetical protein
LOC_Os08g41670Os.57148.1.S1_at10/118+26174601..26177536Uncharacterized protein family UPF0016 containing protein, expressed
LOC_Os08g41680OsAffx.17462.1.S1_at10/118+26179517..26180997expressed protein
LOC_Os08g41690Os.54259.1.S1_at11/118+26181912..26184983expressed protein
LOC_Os08g41700Os.50600.1.S1_at11/118+26186430..26189682expressed protein
LOC_Os08g41710Os.6151.1.S1_at11/118+26192162..26195774FHA domain containing protein, expressed
LOC_Os08g41720Os.53828.1.S1_at11/118+26199096..26202882Auxin Efflux Carrier family protein
LOC_Os08g41730Os.53150.1.S1_at10/118+26209510..26211681Proteasome subunit beta type 1, putative, expressed
LOC_Os08g41740OsAffx.6107.1.S1_at11/118+26212027..26214380hypothetical protein
LOC_Os08g41750OsAffx.17463.1.S1_at11/118+26218338..26219453F-box domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0016563molecular_functiontranscriptional activator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6151.1.S1_at--608--7431Chr08:26195280..26195304 (25 bp)
GGTCCGGAAGTACCTTTCACCAGAG
LOC_Os08g41710
Os.6151.1.S1_at--322--951Chr08:26195303..26195327 (25 bp)
AGGACTGGTCGCCAACTGAAACAAA
LOC_Os08g41710
Os.6151.1.S1_at--943--10091Chr08:26195331..26195355 (25 bp)
TAGGCCATGGTACGGTCTCCTTGCA
LOC_Os08g41710
Os.6151.1.S1_at--1120--8191Chr08:26195363..26195387 (25 bp)
GGAAGTATCCGGAACATTTTGTCAT
LOC_Os08g41710
Os.6151.1.S1_at--113--7051Chr08:26195410..26195434 (25 bp)
GTAACATCGGAGTTCGTCTCGCTGG
LOC_Os08g41710
Os.6151.1.S1_at--804--8531Chr08:26195460..26195484 (25 bp)
TGGACCGTGGCATAATCTGTTCTCA
LOC_Os08g41710
Os.6151.1.S1_at--234--5271Chr08:26195504..26195528 (25 bp)
GAATGATTCGCATCTTCAATCGCTG
LOC_Os08g41710
Os.6151.1.S1_at--315--5411Chr08:26195538..26195562 (25 bp)
GAAGCCTGTTGTACTTTACTGGCCT
LOC_Os08g41710
Os.6151.1.S1_at--566--10271Chr08:26195552..26195576 (25 bp)
TTTACTGGCCTGTGTTTACCCTTAG
LOC_Os08g41710
Os.6151.1.S1_at--587--9951Chr08:26195568..26195592 (25 bp)
TACCCTTAGCTATGTAATCCGGAGA
LOC_Os08g41710
Os.6151.1.S1_at--115--6551Chr08:26195727..26195751 (25 bp)
GATTTTGAAACTTTGCCGTACTCGA
LOC_Os08g41710
Target Sequence 
GGTCCGGAAGTACCTTTCACCAGAGGACTGGTCGCCAACTGAAACAAAAGGTAGGCCATGGTACGGTCTCCTTGCATTGC
TGAGGAAGTATCCGGAACATTTTGTCATCAACACAAGATCGAAAGGCAGGGTAACATCGGAGTTCGTCTCGCTGGTCTCT
TTGCTCTCCTAGAGGTAACCTGGACCGTGGCATAATCTGTTCTCACCGTTCTGGCCCTGCTGAAGAATGATTCGCATCTT
CAATCGCTGAACTGAATTGAAGCCTGTTGTACTTTACTGGCCTGTGTTTACCCTTAGCTATGTAATCCGGAGAAATACAT
AGGGAAACAGGATTTTAACTTATGTTAGTAGCTGGGTTCATGTCTCACTGTTGTGTGGGGTGAGAATGTATGTCTAGTGT
TGTTGAGACTGGAAGCGCGAAAGTTCACAGCANTTTGCTGATTGGAAGATTTTGAAACTTTGCCGTACTCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6151.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis