Browse Element(s) Details


Os.6159.1.S1_at

Description gb:AK069872.1
DB_XREF= gi:32979896
TID=Os.6159.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.6159 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023037M23, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023037M23, full insert sequence.
FL= gb:AK069872.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1816011/11Mitochondrial carrier protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g18140Os.8145.2.S1_at11/113+10127028..10132168expressed protein
LOC_Os03g18150OsAffx.12910.1.S1_at11/113+10142507..10144524Serine/threonine phosphatase type 2c, putative, expressed
LOC_Os03g18160Os.6159.1.S1_at11/113+10150832..10153545Mitochondrial carrier protein, expressed
LOC_Os03g18170Os.55415.1.S1_at11/113+10163613..10166505Protein kinase domain containing protein, expressed
LOC_Os03g18180Os.13953.1.S1_at11/113+10166460..10169274Ran-binding protein 1 homolog c, putative, expressed
LOC_Os03g18190Os.7252.1.S1_at4/113+10171147..10181172Importin-beta N-terminal domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0006810biological_processtransport
GO:0006839biological_processmitochondrial transport
GO:0005743cellular_componentmitochondrial inner membrane
GO:0005488molecular_functionbinding
GO:0017077molecular_functionoxidative phosphorylation uncoupler activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6159.1.S1_at--373--9851Chr03:10153020..10153044 (25 bp)
TACAAGGGTATGGTCCACGCGATAC
LOC_Os03g18160
Os.6159.1.S1_at--987--1311Chr03:10153061..10153085 (25 bp)
AGAGGGTCTCAGAGCCCTTTGGAAA
LOC_Os03g18160
Os.6159.1.S1_at--565--5571Chr03:10153082..10153106 (25 bp)
GAAAGGTTTGCTTCCGAGGCTTATG
LOC_Os03g18160
Os.6159.1.S1_at--283--711Chr03:10153104..10153128 (25 bp)
ATGAGGATTCCACCTGGTCAGGCTA
LOC_Os03g18160
Os.6159.1.S1_at--926--8331Chr03:10153142..10153166 (25 bp)
GGCTGATCAGGTGATGGGCCTCTAT
LOC_Os03g18160
Os.6159.1.S1_at--949--6011Chr03:10153167..10153191 (25 bp)
GAGAGATCATATCTGCAGCCGGCTC
LOC_Os03g18160
Os.6159.1.S1_at--476--4811Chr03:10153188..10153212 (25 bp)
GCTCATATGTAATCCCCGTACTTAA
LOC_Os03g18160
Os.6159.1.S1_at--423--6751Chr03:10153230..10153254 (25 bp)
GTTCAGTTCATCACTTTGGATCGGT
LOC_Os03g18160
Os.6159.1.S1_at--958--1331Chr03:10153342..10153366 (25 bp)
AGAGTTGAGTACTGGCCGGAGCAAT
LOC_Os03g18160
Os.6159.1.S1_at--8--3111Chr03:10153469..10153493 (25 bp)
AATAGCGTAGACCTGCCTGTTTTGC
LOC_Os03g18160
Os.6159.1.S1_at--159--6811Chr03:10153487..10153511 (25 bp)
GTTTTGCTTCTGTGATCAACTGTTC
LOC_Os03g18160
Target Sequence 
TACAAGGGTATGGTCCACGCGATACGCNCAATANACACTGAAGAGGGTCTCAGAGCCCTTTGGAAAGGTTTGCTTCCGAG
GCTTATGAGGATTCCACCTGGTCAGGCTATAATGTGGGCGGTGGCTGATCAGGTGATGGGCCTCTATGAGAGATCATATC
TGCAGCCGGCTCATATGTAATCCCCGTACTTAAGTGATGAACTCAAATTTGTTCAGTTCATCACTTTGGATCGGTGGTAG
AGGGACAAGGCGTCAAAAACTCAAAATCGTTGATCGGAAAAGTATCTGTTCAATTACCTAGACATTAGATTGTTCATAGC
CAAGAGTTGAGTACTGGCCGGAGCAATGAACTGATGTATTCTAAGCAATCAATAATGGTGAAACNGCCCTATTGGATTTT
GATACAAGTGTGCTGATGACCGCAATGTATGTAATGGAGTAGTAAATTGCAATAGCGTAGACCTGCCTGTTTTGCTTCTG
TGATCAACTGTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6159.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis