Browse Element(s) Details


Os.6161.1.S1_at

Description gb:AK071092.1
DB_XREF= gi:32981115
TID=Os.6161.1
CNT=17
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.6161 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023079K08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023079K08, full insert sequence.
FL= gb:AK071092.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g0164011/11Zinc knuckle family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g01610Os.51948.1.S1_at11/119+428888..431329expressed protein
LOC_Os09g01620Os.52200.1.S1_at11/119+436172..441919RNA pseudouridylate synthase family protein, expressed
LOC_Os09g01630Os.6813.1.S1_at11/119+443803..450698transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os09g01640Os.6161.1.S1_at11/119+455264..456840Zinc knuckle family protein, expressed
LOC_Os09g01650NANA9+466011..472046peptidyl-prolyl cis-trans isomerase, FKBP-type family protein, expressed
LOC_Os09g01660NANA9+473421..474010hypothetical protein
LOC_Os09g01670OsAffx.29670.1.S1_at10/119+475979..483575peptidyl-prolyl cis-trans isomerase, FKBP-type family protein
LOC_Os09g01670Os.50619.1.S1_at1/119+475979..483575peptidyl-prolyl cis-trans isomerase, FKBP-type family protein
LOC_Os09g01670Os.50619.1.S1_x_at1/119+475979..483575peptidyl-prolyl cis-trans isomerase, FKBP-type family protein

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Gene Ontology Classification
GO idTypeName
GO:0008026molecular_functionATP-dependent helicase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6161.1.S1_at--367--4371Chr09:456316..456340 (25 bp)
CCACAGGAAGGGTGCATCCGACGGT
LOC_Os09g01640
Os.6161.1.S1_at--382--4971Chr09:456329..456353 (25 bp)
GCATCCGACGGTGATTCTGGAAGTG
LOC_Os09g01640
Os.6161.1.S1_at--41--10611Chr09:456343..456367 (25 bp)
TTCTGGAAGTGGTGCCAGTGACTCT
LOC_Os09g01640
Os.6161.1.S1_at--326--4351Chr09:456357..456381 (25 bp)
CCAGTGACTCTGCAGATGATAGGAA
LOC_Os09g01640
Os.6161.1.S1_at--211--5331Chr09:456498..456522 (25 bp)
GAAGTGGTAATTTGCTCTCAAGTGA
LOC_Os09g01640
Os.6161.1.S1_at--249--1111Chr09:456518..456542 (25 bp)
AGTGATATTATTTACACCCTCTATT
LOC_Os09g01640
Os.6161.1.S1_at--1087--1791Chr09:456533..456557 (25 bp)
ACCCTCTATTTTACCGACAATGCTT
LOC_Os09g01640
Os.6161.1.S1_at--358--2231Chr09:456549..456573 (25 bp)
ACAATGCTTATCTTTGTCCTCTGTC
LOC_Os09g01640
Os.6161.1.S1_at--1085--9251Chr09:456565..456589 (25 bp)
TCCTCTGTCCTGGTGTATGTTGTTA
LOC_Os09g01640
Os.6161.1.S1_at--244--1031Chr09:456617..456641 (25 bp)
AGTGTAGTACTTTGTTCCAGTGAGT
LOC_Os09g01640
Os.6161.1.S1_at--1011--7931Chr09:456742..456766 (25 bp)
GGATTTGCATGGCACCAACTGTAAT
LOC_Os09g01640
Target Sequence 
CCACAGGAAGGGTGCATCCGACGGTGATTCTGGAAGTGGTGCCAGTGACTCTGCAGATGATAGGAAGCGATNTAGCAGGC
GGAGAAGGCACCGNAAGTCAGAAAGTAGTGGATCAGATGGTGATGAACGACATGGTCAGGGGGCAAAGCGGAGCAAGGAA
AAGAGGGGCAAAGAAGAGTGCTGAAGTGGTAATTTGCTCTCAAGTGATATTATTTACACCCTCTATTTTACCGACAATGC
TTATCTTTGTCCTCTGTCCTGGTGTATGTTGTTATTTCAAGCATCATGATTGATATGTATAAGTGTAGTACTTTGTTCCA
GTGAGTGAACTTCAAACTTAATATGCATAGAACGTTTTNCCTTGNNCTTGATAGTTTGTCTGTATTTTAATGAATTGGCT
TTGTTTNNNNGATGAAACTGCAAAATTGGATTTGCATGGCACCAACTGTAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6161.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis