Browse Element(s) Details


Os.6165.1.S1_a_at

Description gb:AK103810.1
DB_XREF= gi:32989019
TID=Os.6165.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=4
UG=Os.6165 (NCBI UniGene Cluster)
UG_TITLE=CSLE1 mRNA, partial cds
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033147A19, full insert sequence.
FL= gb:AK103810.1 gb:AK061639.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3012011/11cellulose synthase-like protein CslE, putative, expressed
LOC_Os09g301301/11Cellulose synthase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g30070Os.50531.1.S1_at11/119+18280422..18286712expressed protein
LOC_Os09g30079NANA9+18288914..18289163NA
LOC_Os09g30090OsAffx.6447.1.S1_at11/119+18289711..18291042hypothetical protein
LOC_Os09g30100NANA9+18292045..18310988NOL1/NOP2/sun family protein, putative, expressed
LOC_Os09g30120Os.6165.1.S1_a_at11/119+18306889..18313233cellulose synthase-like protein CslE, putative, expressed
LOC_Os09g30120OsAffx.30088.2.S1_at1/119+18306889..18313233cellulose synthase-like protein CslE, putative, expressed
LOC_Os09g30120OsAffx.23056.1.S1_at1/119+18306889..18313233cellulose synthase-like protein CslE, putative, expressed
LOC_Os09g30130Os.6165.1.S1_a_at1/119+18315019..18320211Cellulose synthase family protein, expressed
LOC_Os09g30140OsAffx.30095.1.S1_at11/119+18330306..18332053expressed protein
LOC_Os09g30140Os.55282.1.S1_x_at11/119+18330306..18332053expressed protein
LOC_Os09g30140Os.55282.1.S1_at11/119+18330306..18332053expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0000271biological_processpolysaccharide biosynthesis
GO:0009832biological_processcell wall biosynthesis (sensu Magnoliophyta)
GO:0009834biological_processsecondary cell wall biosynthesis (sensu Magnoliophyta)
GO:0030244biological_processcellulose biosynthesis
GO:0005886cellular_componentplasma membrane
GO:0016740molecular_functiontransferase activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
GO:0016759molecular_functioncellulose synthase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6165.1.S1_a_at--1068--151Chr09:18307461..18307485 (25 bp)
ATTTTGTGTGAAGACCCTCTACGGT
LOC_Os09g30120
Os.6165.1.S1_a_at--620--5811Chr09:18307449..18307473 (25 bp)
GACCCTCTACGGTCTTTATGAGGCA
LOC_Os09g30120
Os.6165.1.S1_a_at--1162--9851Chr09:18307287..18307311 (25 bp)
TACAGCAAAGGTAAGCGGTCACGAT
LOC_Os09g30120
Os.6165.1.S1_a_at--939--1451Chr09:18307233..18307257 (25 bp)
AGAATTTGGGTCATCGTCTCCTGAA
LOC_Os09g30120
Os.6165.1.S1_a_at--588--9011Chr09:18307212..18307236 (25 bp)
TGAATATGTGATCATCGCAACCGTC
LOC_Os09g30120
Os.6165.1.S1_a_at--118--2631Chr09:18307194..18307218 (25 bp)
AACCGTCGCATTACTGAACTTCGTC
LOC_Os09g30120
Os.6165.1.S1_a_at--906--2511Chr09:18307178..18307202 (25 bp)
AACTTCGTCTGCCTAGTTGGAGGGT
LOC_Os09g30120
Os.6165.1.S1_a_at--749--3491Chr09:18307100..18307124 (25 bp)
CAGGCCATCCTCTGTGGAATGATAG
LOC_Os09g30120
Os.6165.1.S1_a_at--147--8071Chr09:18307024..18307048 (25 bp)
GGAGAATACCAACAGCAGTCACACT
LOC_Os09g30120
Os.6165.1.S1_a_at--436--3412Chr09:18307012..18307036 (25 bp)
CAGCAGTCACACTAGCTTCAATTGG
LOC_Os09g30120
Os.6165.1.S1_a_at--182--8291Chr09:18306975..18306999 (25 bp)
GGCATTCCTAGTACCAATAGTTTGA
LOC_Os09g30120
Target Sequence 
ATTTTGTGTGAAGACCCTCTACGGTCTTTATGAGGCATTATTATCTGGGGATACATTGAAAGGATGGTGGAATGGACAAA
GGATGTGGATGGTGAAAAGCATTACCTCATATCTATATGGCTTCATTGACACCATCCGAAAATGTGTAGGAATGTCAAAG
ATGTCATTTGAAGTTACAGCAAAGGTAAGCGGTCACGATGAAGCAAAGAGGTATGAGCAAGAAATCCTAGAATTTGGGTC
ATCGTCTCCTGAATATGTGATCATCGCAACCGTCGCATTACTGAACTTCGTCTGCCTAGTTGGAGGGTTAAGTCAAATAA
TGGCAGGTGTCTGGAATATGCCATGGAATGTGTTTTTACCCCAGGCCATCCTCTGTGGAATGATAGTAATCATTAATATG
CCAATTTATGAGGCAATGTTCCTAAGAAAGGACAATGGGAGAATACCAACAGCAGTCACACTAGCTTCAATTGGCTTTGT
AATGTTGGCATTCCTAGTACCAATAGTTTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6165.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis