Browse Element(s) Details


Os.6198.1.S1_at

Description gb:AK064331.1
DB_XREF= gi:32974349
TID=Os.6198.1
CNT=16
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.6198 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-107-G02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-107-G02, full insert sequence.
FL= gb:AK064331.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1041011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g10390OsAffx.8965.1.S1_at1/118+6092034..6094474hypothetical protein
LOC_Os08g10400Os.8987.1.S1_at4/118+6096652..6099054expressed protein
LOC_Os08g10400Os.10468.1.S1_at2/118+6096652..6099054expressed protein
LOC_Os08g10410Os.6198.1.S1_at11/118+6106033..6109271expressed protein
LOC_Os08g10420OsAffx.5777.1.S1_at11/118+6115476..6117299Transferase family protein, expressed
LOC_Os08g10430Os.49897.1.S1_at11/118+6121076..6125048NB-ARC domain containing protein, expressed
LOC_Os08g10440OsAffx.29134.1.S1_at11/118+6131714..6135162NB-ARC domain containing protein, expressed
LOC_Os08g10440Os.23329.1.S1_s_at11/118+6131714..6135162NB-ARC domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6198.1.S1_at--275--10611Chr08:6106594..6106618 (25 bp)
TTCTGTGTGGTTACTGTTCAGCCAT
LOC_Os08g10410
Os.6198.1.S1_at--649--6751Chr08:6106579..6106603 (25 bp)
GTTCAGCCATTTGCAAAAGCTCCCG
LOC_Os08g10410
Os.6198.1.S1_at--277--2351Chr08:6106564..6106588 (25 bp)
AAAGCTCCCGTTGGCAGGTGATACT
LOC_Os08g10410
Os.6198.1.S1_at--442--7231Chr08:6106449..6106473 (25 bp)
GTCCCAATATTTCCAGTTGTCACGA
LOC_Os08g10410
Os.6198.1.S1_at--264--5491Chr08:6106391..6106415 (25 bp)
GAACATGGTTTCCTTCACAACTGTA
LOC_Os08g10410
Os.6198.1.S1_at--441--1891Chr08:6106372..6106396 (25 bp)
ACTGTAGTTCCTTAAATCCCCTGTG
LOC_Os08g10410
Os.6198.1.S1_at--409--551Chr08:6106357..6106381 (25 bp)
ATCCCCTGTGATTAGCTATTACCTG
LOC_Os08g10410
Os.6198.1.S1_at--810--7791Chr08:6106210..6106234 (25 bp)
GGTCCATGTGGAACTGCAAATCTGA
LOC_Os08g10410
Os.6198.1.S1_at--273--10551Chr08:6106110..6106134 (25 bp)
TTCATTTCTGTTCTGGCCATCATCG
LOC_Os08g10410
Os.6198.1.S1_at--256--9752Chr07:4102481..4102502 (22 bp)
TAATCACATGCCTGGGAGCTTCATC
NONE
Os.6198.1.S1_at--1087--7631Chr08:6106059..6106083 (25 bp)
GGGAGCTTCATCTGTGTTGGTTAAT
LOC_Os08g10410
Target Sequence 
TTCTGTGTGGTTACTGTTCAGCCATTTGCAAAAGCTCCCGTTGGCAGGTGATACTGACAGGATAAATGATTACCCNTGAC
ACTGAATGATGTTAGTTCCTTGTAACAAACTATCACTGGGCGTTAAGACTTAAGAGGCAATACATGTCCCAATATTTCCA
GTTGTCACGAGATGATTATCAATGAAAAGAACAGAGCATTTCTGAACATGGTTTCCTTCACAACTGTAGTTCCTTAAATC
CCCTGTGATTAGCTATTACCTGTGCATGCAAAAATGTATAATGATTACTGGAAATCTATCATCTTTCTGTGTAATATTTT
GATCGACATCGTTTTTAGGAAGACGCTGGGAACAGAACAGATTGACATCAGTTACTGAGGGTGTGGTCCATGTGGAACTG
CAAATCTGATATCACTAGTTGACAGCTGAAACTAAACTAGCTAATGTAATCTTAAGGCTACGTTTAATGTAACCTGACCA
GGCCTTCATTTCTGTTCTGGCCATCATCGTGCCAAACAATGATAATCACATGCCTGGGAGCTTCATCTGTGTTGGTTAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6198.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis