Browse Element(s) Details


Os.6220.1.S1_at

Description gb:AK069027.1
DB_XREF= gi:32979051
TID=Os.6220.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.6220 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023003A15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023003A15, full insert sequence.
FL= gb:AK120204.1 gb:AK069027.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1543011/11zinc finger family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g15390OsAffx.29851.1.S1_at11/119+9416888..9422872NB-ARC domain containing protein, expressed
LOC_Os09g15400NANA9+9430092..9431665Inositol monophosphatase - like protein, putative
LOC_Os09g15410NANA9+9433632..9434432retrotransposon protein, putative, unclassified
LOC_Os09g15420Os.50492.1.S1_at11/119+9436673..9441552UDP-glucose 4-epimerase GEPI48, putative, expressed
LOC_Os09g15430Os.6220.1.S1_at11/119+9444001..9448750zinc finger family protein, putative, expressed
LOC_Os09g15440OsAffx.6284.1.S1_at11/119+9451832..9453103F-box domain containing protein
LOC_Os09g15450OsAffx.17716.1.S1_at11/119+9454103..9456977hypothetical protein
LOC_Os09g15460NANA9+9458301..9462945retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g15470Os.27691.1.S1_x_at4/119+9464788..9470500retrotransposon protein, putative, Ty3-gypsy subclass

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6220.1.S1_at--646--7311Chr09:9444566..9444590 (25 bp)
GTGCTGCATCTGTCTTACTAAGTAC
LOC_Os09g15430
Os.6220.1.S1_at--940--3351Chr09:9444509..9444533 (25 bp)
CACCCACTTCTTTCATGTGCAATGT
LOC_Os09g15430
Os.6220.1.S1_at--390--1271Chr09:9444468..9444492 (25 bp)
AGATAAATGCAGTGTGCCCACTCTG
LOC_Os09g15430
Os.6220.1.S1_at--453--4551Chr09:9444453..9444477 (25 bp)
GCCCACTCTGCAAGACCGAGATTGG
LOC_Os09g15430
Os.6220.1.S1_at--885--6691Chr09:9444421..9444445 (25 bp)
GTTCGATCATTTTTTGGCTTGCCCT
LOC_Os09g15430
Os.6220.1.S1_at--517--6891Chr09:9444360..9444384 (25 bp)
GTATAGCTAGCTCGAGATTCACTGT
LOC_Os09g15430
Os.6220.1.S1_at--61--291Chr09:9444335..9444359 (25 bp)
ATAGAACACGTCTTCTTCTCTAGCA
LOC_Os09g15430
Os.6220.1.S1_at--989--2331Chr09:9444277..9444301 (25 bp)
AAAGACGTGCTCATGGATTGTAGTT
LOC_Os09g15430
Os.6220.1.S1_at--132--1651Chr09:9444235..9444259 (25 bp)
AGCGATAATCTGCTTTCATCACCCT
LOC_Os09g15430
Os.6220.1.S1_at--444--10531Chr09:9444221..9444245 (25 bp)
TTCATCACCCTTGAGTTCACCAAAG
LOC_Os09g15430
Os.6220.1.S1_at--1104--8051Chr09:9444181..9444205 (25 bp)
GGAGACCTGATGCTTGCAGTGACAA
LOC_Os09g15430
Target Sequence 
GTGCTGCATCTGTCTTACTAAGTACGGAGATGATGATGAGCTCCGTGAGCTTCCTTGCACCCACTTCTTTCATGTGCAAT
GTGTCGATAAATGGCTCAAGATAAATGCAGTGTGCCCACTCTGCAAGACCGAGATTGGGGGTGTGGTTCGATCATTTTTT
GGCTTGCCCTTTGGTCGCCGACGTGTTGATAGGATGGCAGGAAGAGGTATAGCTAGCTCGAGATTCACTGTATAGAACAC
GTCTTCTTCTCTAGCATGTTTGCTTGTTTCATCTGCTCATATGCACATAAAAGACGTGCTCATGGATTGTAGTTTGTTGA
TTTGCAATGAAAGCGATAATCTGCTTTCATCACCCTTGAGTTCACCAAAGTGATGACAGAAAAGTGGAGACCTGATGCTT
GCAGTGACAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6220.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis