Browse Element(s) Details


Os.6231.1.S1_at

Description gb:AK108274.1
DB_XREF= gi:32993483
TID=Os.6231.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.6231 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-141-C06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-141-C06, full insert sequence.
FL= gb:AK108274.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3408011/11expressed protein
LOC_Os04g468801/11Glycerol 3-phosphate permease, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g34070OsAffx.19149.1.S1_at11/1111+19423950..19425676hypothetical protein
LOC_Os11g34080Os.6231.1.S1_at11/1111+19438274..19439678expressed protein
LOC_Os11g34080OsAffx.31032.1.S1_at1/1111+19438274..19439678expressed protein
LOC_Os11g34090OsAffx.7292.1.S1_at11/1111+19448650..19452078hypothetical protein
LOC_Os11g34090OsAffx.7292.1.S1_x_at11/1111+19448650..19452078hypothetical protein
LOC_Os11g34090OsAffx.31930.1.S1_x_at1/1111+19448650..19452078hypothetical protein
LOC_Os11g34100NANA11+19453993..19454574hypothetical protein
LOC_Os11g34110Os.53335.1.S1_at11/1111+19455501..19462028expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006810biological_processtransport
GO:0008643biological_processcarbohydrate transport
GO:0015794biological_processglycerol-3-phosphate transport
GO:0005215molecular_functiontransporter activity
GO:0005351molecular_functionsugar porter activity
GO:0015169molecular_functionglycerol-3-phosphate transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6231.1.S1_at--939--4131Chr11:19438631..19438655 (25 bp)
CGCTGCTGCCGATCCCCGGGATGAT
LOC_Os11g34080
Os.6231.1.S1_at--833--511Chr11:19439383..19439407 (25 bp)
ATCGATCTCGCTAACTCCAGATGAG
LOC_Os11g34080
Os.6231.1.S1_at--892--3811Chr11:19439397..19439421 (25 bp)
CTCCAGATGAGTAATTTAGCTAGAC
LOC_Os11g34080
Os.6231.1.S1_at--668--10431Chr11:19439440..19439464 (25 bp)
TTAGCTGAATTGATCCAGTTCGTTT
LOC_Os11g34080
Os.6231.1.S1_at--284--6371Chr11:19439451..19439475 (25 bp)
GATCCAGTTCGTTTTGTTCTTTTAG
LOC_Os11g34080
Os.6231.1.S1_at--389--10511Chr11:19439509..19439533 (25 bp)
TTCAATTGGCGTTTTGTGTTCATCC
LOC_Os11g34080
Os.6231.1.S1_at--287--551Chr11:19439530..19439554 (25 bp)
ATCCCCTCTCTGTAAAATTACCGCT
LOC_Os11g34080
Os.6231.1.S1_at--764--7031Chr11:19439541..19439565 (25 bp)
GTAAAATTACCGCTCAGTGGAAAAT
LOC_Os11g34080
Os.6231.1.S1_at--52--10332Chr11:19439565..19439589 (25 bp)
TTTCACCGTGTCCTCTTTTGGCCTT
LOC_Os11g34080
Os.6231.1.S1_at--465--10871Chr11:19439582..19439606 (25 bp)
TTGGCCTTCCGGGTCAAGAAAAGCT
LOC_Os11g34080
Os.6231.1.S1_at--114--2451Chr11:19439645..19439669 (25 bp)
AAAATTGAATGCATGGCCCTTTTTT
LOC_Os11g34080
Target Sequence 
CGCTGCTGCCGATCCCCGGGATGATGAAGGTGGCGGCGCCGGTGAGCCGGTTGGTGGAGTCGGGGATGACGTCGACGAGT
GGGAGGTCAGCGGCGGCGGTGGGGGATGCGCTGGTGTCNGNNNNNNNNNNGCNNNNCNCNNNNNNCNACNNNNNNNTNNG
NANGGNGTGCGAGCCCAAGCTGGACGCTTGCCCCGTCTGCCTCGCCGCCAAGAACGCCTCCGTCCACATCGCCATCAACT
GATCGAACACCGTCCTCCTCATCGCCATCGATCTCGCTAACTCCAGATGAGTAATTTAGCTAGACATAGATTAGGTAGGG
GGATTAGCTGAATTGATCCAGTTCGTTTTGTTCTTTTAGTATTAGGGTAAAAAAAATGATGACATGGTTAAATTCAATTG
GCGTTTTGTGTTCATCCCCTCTCTGTAAAATTACCGCTCAGTGGAAAATTTCACCGTGTCCTCTTTTGGCCTTCCGGGTC
AAGAAAAGCTTACAAGTTGTAAAAAAAAAAGTCAGGCATCTGATTGTAAAAATTGAATGCATGGCCCTTTTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6231.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis