Browse Element(s) Details


Os.6246.1.S1_at

Description gb:AK103387.1
DB_XREF= gi:32988596
TID=Os.6246.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.6246 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033127I18, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033127I18, full insert sequence.
FL= gb:AK103387.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2489011/11RNA recognition motif family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g24844Os.18653.1.S1_at11/113+14129295..14132486Uncharacterised protein family containing protein, expressed
LOC_Os03g24860Os.24794.2.S1_at11/113+14132678..14137979Sugar transporter family protein, expressed
LOC_Os03g24860Os.24794.1.S1_x_at10/113+14132678..14137979Sugar transporter family protein, expressed
LOC_Os03g24870Os.31838.1.S1_at10/113+14144400..14149212Sugar transporter family protein, expressed
LOC_Os03g24880OsAffx.25214.1.S1_at11/113+14153330..14155024pentatricopeptide, putative
LOC_Os03g24890Os.6246.1.S1_at11/113+14155226..14159818RNA recognition motif family protein, expressed
LOC_Os03g24890OsAffx.25215.1.S1_at10/113+14155226..14159818RNA recognition motif family protein, expressed
LOC_Os03g24890OsAffx.10482.1.S1_x_at1/113+14155226..14159818RNA recognition motif family protein, expressed
LOC_Os03g24900Os.10674.1.S1_at11/113+14162432..14166957zinc finger family protein, putative, expressed
LOC_Os03g24910OsAffx.3315.1.S1_s_at11/113+14167517..14171210nodulation protein, putative, expressed
LOC_Os03g24920Os.36846.1.S1_at11/113+14174966..14178118ubiquitin, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0000398biological_processnuclear mRNA splicing, via spliceosome
GO:0016607cellular_componentnuclear speck
GO:0035061cellular_componentinterchromatin granule
GO:0003723molecular_functionRNA binding
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6246.1.S1_at--951--9691Chr03:14159292..14159316 (25 bp)
TCAAATGGTCGATCTGCTAGCCCAG
LOC_Os03g24890
Os.6246.1.S1_at--870--9991Chr03:14159309..14159333 (25 bp)
TAGCCCAGATGAGCTCGAGCGTCAT
LOC_Os03g24890
Os.6246.1.S1_at--1004--1631Chr03:14159326..14159350 (25 bp)
AGCGTCATGTATCTCCATCCAATAA
LOC_Os03g24890
Os.6246.1.S1_at--390--2111Chr03:14159354..14159378 (25 bp)
ACATGGTCCTCCAGTTGATGGGAAA
LOC_Os03g24890
Os.6246.1.S1_at--291--4751Chr03:14159380..14159403 (24 bp)
GCTGATAAAGATCTCGCTCCAAGGC
LOC_Os03g24890
Os.6246.1.S1_at--1127--9951Chr03:14159590..14159614 (25 bp)
TACCGTGGTAGTGCCTTTTATGCTA
LOC_Os03g24890
Os.6246.1.S1_at--716--7031Chr03:14159658..14159682 (25 bp)
GTACACTCCATATGCAGTTTGCCTA
LOC_Os03g24890
Os.6246.1.S1_at--1108--6471Chr03:14159685..14159709 (25 bp)
GATACTTAGGTTAGCGCCTGCTGCT
LOC_Os03g24890
Os.6246.1.S1_at--929--431Chr03:14159749..14159773 (25 bp)
ATCTTTCTTAGTTTGTTTGCTGCCA
LOC_Os03g24890
Os.6246.1.S1_at--672--9191Chr03:14159769..14159793 (25 bp)
TGCCATGCCGACATGCATCTTGTGC
LOC_Os03g24890
Os.6246.1.S1_at--589--9591Chr03:14159786..14159810 (25 bp)
TCTTGTGCCCACTTATCTATTTGAT
LOC_Os03g24890
Target Sequence 
TCAAATGGTCGATCTGCTAGCCCAGATGAGCTCGAGCGTCATGTATCTCCATCCAATAATGGACATGGTCCTCCAGTTGA
TGGGAAAAGCTGATAAAGATCTCGCTCCAAGGCGAGGCAAGCGTTTGAAGTTTGGAGTTCTTGGATCAAGAGTTGGAAGT
TGGAACTAGGGAGCATGCAAATTACANCACCATGAAATGTACCGTGGTAGTGCCTTTTATGCTATTTTGTAGAATAGATA
AGCAAAGCCTGGTAGCGAAGTAAGTTTGTACACTCCATATGCAGTTTGCCTATCGATACTTAGGTTAGCGCCTGCTGCTT
TTGCTTTTGTTGANCTGTTTTAAATGATTTTCTATCTGATCTTTCTTAGTTTGTTTGCTGCCATGCCGACATGCATCTTG
TGCCCACTTATCTATTTGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6246.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis