Browse Element(s) Details


Os.6257.1.S1_at

Description gb:AK102112.1
DB_XREF= gi:32987321
TID=Os.6257.1
CNT=15
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.6257 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-207-D12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033084G03, full insert sequence.
FL= gb:AK109370.2 gb:AK102112.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0849011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g08470Os.15792.1.S1_at11/116+4161948..4166025expressed protein
LOC_Os06g08480Os.10925.1.S1_at11/116+4166231..4182563Type III restriction enzyme, res subunit family protein, expressed
LOC_Os06g08490Os.6257.1.S1_at11/116+4188087..4189564expressed protein
LOC_Os06g08500OsAffx.27510.2.S1_at11/116+4191208..4193417Helix-loop-helix DNA-binding domain containing protein
LOC_Os06g08500OsAffx.27510.2.S1_x_at11/116+4191208..4193417Helix-loop-helix DNA-binding domain containing protein
LOC_Os06g08510OsAffx.4769.1.S1_s_at11/116+4199932..4201852expressed protein
LOC_Os06g08510OsAffx.4769.1.S1_at11/116+4199932..4201852expressed protein
LOC_Os06g08510Os.37590.1.S1_at10/116+4199932..4201852expressed protein
LOC_Os06g08520NANA6+4204533..4205996transposon protein, putative, unclassified
LOC_Os06g08530Os.11350.1.S1_x_at11/116+4212191..4217589Ubiquitin carboxyl-terminal hydrolase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6257.1.S1_at--606--2871Chr06:4188612..4188636 (25 bp)
AAGTGGGAGTAAGCATGCTGCCGCT
LOC_Os06g08490
Os.6257.1.S1_at--973--6911Chr06:4188474..4188498 (25 bp)
GTATGCATCGATTTTTACTTCTTCC
LOC_Os06g08490
Os.6257.1.S1_at--959--971Chr06:4188433..4188457 (25 bp)
AGGAGACATACTCATGCCGGTCACT
LOC_Os06g08490
Os.6257.1.S1_at--857--7531Chr06:4188415..4188439 (25 bp)
GGTCACTTCCCCTTGGAAGGAACTG
LOC_Os06g08490
Os.6257.1.S1_at--457--8291Chr06:4188362..4188386 (25 bp)
GGCTTGGAGGTGAACATCCTGCACT
LOC_Os06g08490
Os.6257.1.S1_at--473--2091Chr06:4188349..4188373 (25 bp)
ACATCCTGCACTGATTTGCTTCATA
LOC_Os06g08490
Os.6257.1.S1_at--568--9071Chr06:4188333..4188357 (25 bp)
TGCTTCATAGCATGGTTCACCTGCA
LOC_Os06g08490
Os.6257.1.S1_at--166--9751Chr06:4188295..4188319 (25 bp)
TAATTTTAGTTGTCGGTGTTCTTCA
LOC_Os06g08490
Os.6257.1.S1_at--93--7432Chr02:34976281..34976300 (20 bp)
GTGTTCTTCATGCTTTGATTACTGA
NONE
Os.6257.1.S1_at--1132--7571Chr06:4188251..4188275 (25 bp)
GGGCTCTGTGTTTCCATTGTCAAGG
LOC_Os06g08490
Os.6257.1.S1_at--272--311Chr06:4188160..4188184 (25 bp)
ATACCAGCTCTGAAATCTTCTGTAG
LOC_Os06g08490
Target Sequence 
AAGTGGGAGTAAGCATGCTGCCGCTGCCGTGATGGCAGGGGGTGCTGAGAAGCTTGAAAATGGGAAGAAGGGGGAGGCTC
CCTCTTTGAAGCGGTTCAAGGCTGGAGACCATGCACCNGCATATGCAAACAAAGAAGTGTATGCATCGATTTTTACTTCT
TCCAAGAAGTCAGATTTCAAGGAGACATACTCATGCCGGTCACTTCCCCTTGGAAGGAACTGAAGCGATCTTCTATTGAG
AGATGGTAATGGCTTGGAGGTGAACATCCTGCACTGATTTGCTTCATAGCATGGTTCACCTGCAAGTTTCTTCATTGTAA
TTTTAGTTGTCGGTGTTCTTCATGCTTTGATTACTGATGTGGGGCTCTGTGTTTCCATTGTCAAGGAAGCAAAGTGTCGG
AGTATTTGAAAGATGTGTGAAATATGTAATAGTTTGATACCATTAACAAGCAATACCAGCTCTGAAATCTTCTGTAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6257.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis