Browse Element(s) Details


Os.6262.1.S1_at

Description gb:AK101352.1
DB_XREF= gi:32986561
TID=Os.6262.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.6262 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033034P09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033034P09, full insert sequence.
FL= gb:AK101352.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4118010/11Nuclear transport factor 2 domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g41160OsAffx.16669.1.S1_at11/117+24630624..24634572expressed protein
LOC_Os07g41170OsAffx.5590.1.S1_at11/117+24640597..24641572expressed protein
LOC_Os07g41180Os.6262.1.S1_at10/117+24653212..24658153Nuclear transport factor 2 domain containing protein, expressed
LOC_Os07g41190Os.7119.1.S1_at11/117+24658444..24660898WD-repeat protein 50, putative, expressed
LOC_Os07g41200Os.27494.1.S1_at10/117+24662565..24667626expressed protein
LOC_Os07g41210OsAffx.16670.1.S1_at11/117+24680733..24681179hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006913biological_processnucleocytoplasmic transport
GO:0003723molecular_functionRNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6262.1.S1_at--451--5291Chr07:24653618..24653642 (25 bp)
GAATGGGTCTGGATACTATCATCAG
LOC_Os07g41180
Os.6262.1.S1_at--395--8211Chr07:24653589..24653613 (25 bp)
GGAATGGCTATCGTCAGGACCGCAT
LOC_Os07g41180
Os.6262.1.S1_at--26--5831Chr07:24653572..24653596 (25 bp)
GACCGCATCTTCCACAATGGGAATG
LOC_Os07g41180
Os.6262.1.S1_at--407--9071Chr07:24653534..24653558 (25 bp)
TGCTCGCTTCAATGGACCCAGGCAA
LOC_Os07g41180
Os.6262.1.S1_at--108--3271Chr07:24653512..24653536 (25 bp)
CAAACACCGGTTCAAGCGTAGGCGT
LOC_Os07g41180
Os.6262.1.S1_at--633--3671Chr07:24653466..24653490 (25 bp)
CTTTTGTCAATCCTAGGATCGCCTT
LOC_Os07g41180
Os.6262.1.S1_at--870--7971Chr07:24653451..24653475 (25 bp)
GGATCGCCTTATTTATCTGTGTTCT
LOC_Os07g41180
Os.6262.1.S1_at--141--10611Chr07:24653415..24653439 (25 bp)
TTCGGCTGCGACAAAGTTCAGTCCC
LOC_Os07g41180
Os.6262.1.S1_at--520--10291Chr07:24653380..24653404 (25 bp)
TTTGCCTCGATGCTTTTGCTGACTA
LOC_Os07g41180
Os.6262.1.S1_at--464--2031Chr07:24653359..24653383 (25 bp)
ACTAGTTGGCATGTTCTGGATGTAC
LOC_Os07g41180
Os.6262.1.S1_at--396--6411Chr07:24653212..24653236 (25 bp)
GATCTGTTGTGTGCTTTTCCTTATG
NONE
Target Sequence 
GAATGGGTCTGGATACTATCATCAGAATGGGAATGGCTATCGTCAGGACCGCATCTTCCACAATGGGAATGGAAATGGGC
GGCCTGCTCGCTTCAATGGACCCAGGCAAACACCGGTTCAAGCGTAGGCGTTTNTTGAATATCCAAAAAATCCTTTTGTC
AATCCTAGGATCGCCTTATTTATCTGTGTTCTTTTGCACCCCATTCGGCTGCGACAAAGTTCAGTCCCAGCCCTTCGTTT
TGCCTCGATGCTTTTGCTGACTAGTTGGCATGTTCTGGATGTACTTGGTGAGACCAGGAAGTGTAATTTTGGAAAGGTTG
GGAGCTTACTGCAAGGTTCGTGACTTCATGTCGAGACATGCTATCTAATATATGCATTAGTATTTATGGCACGCAGATGG
ATGAAGGATCTGTTGTGTGCTTTTCCTTATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6262.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis