Browse Element(s) Details


Os.6310.1.S1_at

Description gb:AK100357.1
DB_XREF= gi:32985566
TID=Os.6310.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.6310 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023083K12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023083K12, full insert sequence.
FL= gb:AK072116.1 gb:AK100357.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1114011/11protein kinase family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g11120NANA5+6236551..6237132PRA1 family protein, expressed
LOC_Os05g11130OsAffx.14631.1.S1_at10/115+6247218..6252091Cytochrome P450 90D2, putative, expressed
LOC_Os05g11140Os.6310.1.S1_at11/115+6252623..6261853protein kinase family protein, putative, expressed
LOC_Os05g11150OsAffx.14632.1.S1_at11/115+6264236..6264772hypothetical protein
LOC_Os05g11160Os.56929.1.S1_at11/115+6271519..6272790expressed protein
LOC_Os05g11170OsAffx.26825.1.S1_at11/115+6284942..6286013hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6310.1.S1_at--457--10611Chr05:6253192..6253216 (25 bp)
TTCTGTTTGGCTGCTTCTTTGTAGA
LOC_Os05g11140
Os.6310.1.S1_at--356--6071Chr05:6253169..6253193 (25 bp)
GAGTTTATTCATATCAACCGCTGGA
LOC_Os05g11140
Os.6310.1.S1_at--175--10791Chr05:6253076..6253100 (25 bp)
TTGATAGATGGCCAAGCCTCCTGCG
LOC_Os05g11140
Os.6310.1.S1_at--93--2671Chr05:6253063..6253087 (25 bp)
AAGCCTCCTGCGTGTGTTCTGTATA
LOC_Os05g11140
Os.6310.1.S1_at--452--7471Chr05:6253052..6253076 (25 bp)
GTGTGTTCTGTATAGGTGCCCCAGC
LOC_Os05g11140
Os.6310.1.S1_at--751--9171Chr05:6253036..6253060 (25 bp)
TGCCCCAGCCTGGAAGTTGCATAAT
LOC_Os05g11140
Os.6310.1.S1_at--90--1971Chr05:6253007..6253031 (25 bp)
ACTGTGCTGTCCTGTTGTTGTACCC
LOC_Os05g11140
Os.6310.1.S1_at--670--2351Chr05:6252864..6252888 (25 bp)
AAAGCTAACTCGAGTCTGCGGTCCT
LOC_Os05g11140
Os.6310.1.S1_at--898--9131Chr05:6252848..6252872 (25 bp)
TGCGGTCCTGTTATTTCTCTGTTTT
LOC_Os05g11140
Os.6310.1.S1_at--140--9511Chr05:6252833..6252857 (25 bp)
TCTCTGTTTTGGCTTTTTCGTGTTT
LOC_Os05g11140
Os.6310.1.S1_at--896--10411Chr05:6252689..6252713 (25 bp)
TTATCATTCACTCTTGCAGTCCATC
LOC_Os05g11140
Target Sequence 
TTCTGTTTGGCTGCTTCTTTGTAGAGTTTATTCATATCAACCGCTGGAGATATGATTTAGAATGCGAATTTTGAAGGGCA
ATGATATTTTTAATTGCTTACCTATAGTTAACTGAATTGATAGATGGCCAAGCCTCCTGCGTGTGTTCTGTATAGGTGCC
CCAGCCTGGAAGTTGCATAATGTATACTGTGCTGTCCTGTTGTTGTACCCCCTTGTCCATAGATTGCTAAAGTNCGCCAT
GTTGTAAGTTAGCGAGTTGTNCCATGTTTAGAAGTCGTGCATATAGTTTAAATTTATATTTAACCTGGAGGTAGGCGACA
AAATTGTACAAAGCTAACTCGAGTCTGCGGTCCTGTTATTTCTCTGTTTTGGCTTTTTCGTGTTTGTGAACCCCCTATAG
TGCTTAGAGTTTGGAGTTCTTTTTTTTCTTTTTGAGCTCCAAAGTTCGGAGTTNTCATCTGTAAATTAAATCTGCAATGC
ATGCATNTAGTGACTGGTGAATCTATTATCATTCACTCTTGCAGTCCATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6310.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis