Browse Element(s) Details


OsAffx.14632.1.S1_at

Description tigr:9633.m00978
TID=OsAffx.14632.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1115011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g11130OsAffx.14631.1.S1_at10/115+6247218..6252091Cytochrome P450 90D2, putative, expressed
LOC_Os05g11140Os.6310.1.S1_at11/115+6252623..6261853protein kinase family protein, putative, expressed
LOC_Os05g11150OsAffx.14632.1.S1_at11/115+6264236..6264772hypothetical protein
LOC_Os05g11160Os.56929.1.S1_at11/115+6271519..6272790expressed protein
LOC_Os05g11170OsAffx.26825.1.S1_at11/115+6284942..6286013hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14632.1.S1_at--1100--4211Chr05:6264701..6264725 (25 bp)
CCGCGTCTACGGGACTGGTGGATCC
LOC_Os05g11150
OsAffx.14632.1.S1_at--236--3691Chr05:6264695..6264719 (25 bp)
CTACGGGACTGGTGGATCCGCTGTT
LOC_Os05g11150
OsAffx.14632.1.S1_at--417--2671Chr05:6264651..6264675 (25 bp)
AAGCAATGGCTTCAAGTAGTCGCAA
LOC_Os05g11150
OsAffx.14632.1.S1_at--665--851Chr05:6264646..6264670 (25 bp)
ATGGCTTCAAGTAGTCGCAACGACC
LOC_Os05g11150
OsAffx.14632.1.S1_at--780--10051Chr05:6264635..6264659 (25 bp)
TAGTCGCAACGACCATGCTAGCGGT
LOC_Os05g11150
OsAffx.14632.1.S1_at--248--1871Chr05:6264627..6264651 (25 bp)
ACGACCATGCTAGCGGTGGGCTTCA
LOC_Os05g11150
OsAffx.14632.1.S1_at--970--3711Chr05:6264618..6264642 (25 bp)
CTAGCGGTGGGCTTCATGCGACAGT
LOC_Os05g11150
OsAffx.14632.1.S1_at--684--8651Chr05:6264611..6264635 (25 bp)
TGGGCTTCATGCGACAGTGGTGACC
LOC_Os05g11150
OsAffx.14632.1.S1_at--1007--7911Chr05:6264576..6264600 (25 bp)
GGATTCGTTGCTTACGGCCATGGGA
LOC_Os05g11150
OsAffx.14632.1.S1_at--675--91Chr05:6264574..6264598 (25 bp)
ATTCGTTGCTTACGGCCATGGGAGC
LOC_Os05g11150
OsAffx.14632.1.S1_at--784--791Chr05:6264557..6264581 (25 bp)
ATGGGAGCGTCGAATCCGTCGGCGG
LOC_Os05g11150
Target Sequence 
CCGCGTCTACGGGACTGGTGGATCCGCTGTTGGGAGGCCGAGGACGGCGGAAGCAATGGCTTCAAGTAGTCGCAACGACC
ATGCTAGCGGTGGGCTTCATGCGACAGTGGTGACCATGGAAGAGGGGATTCGTTGCTTACGGCCATGGGAGCGTCGAATC
CGTCGGCGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14632.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis