Browse Element(s) Details


Os.56929.1.S1_at

Description gb:AK110596.1
DB_XREF= gi:32995805
TID=Os.56929.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.56929 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-168-G03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-168-F12, full insert sequence.
FL= gb:AK110596.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1116011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g11130OsAffx.14631.1.S1_at10/115+6247218..6252091Cytochrome P450 90D2, putative, expressed
LOC_Os05g11140Os.6310.1.S1_at11/115+6252623..6261853protein kinase family protein, putative, expressed
LOC_Os05g11150OsAffx.14632.1.S1_at11/115+6264236..6264772hypothetical protein
LOC_Os05g11160Os.56929.1.S1_at11/115+6271519..6272790expressed protein
LOC_Os05g11170OsAffx.26825.1.S1_at11/115+6284942..6286013hypothetical protein
LOC_Os05g11180OsAffx.14633.1.S1_at11/115+6292298..6293874hypothetical protein
LOC_Os05g11190OsAffx.14634.1.S1_x_at11/115+6296201..6298267RPT2, putative

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.56929.1.S1_at--713--7311Chr05:6271813..6271837 (25 bp)
GTGCTCCCTAGCTAGCTCGATATAC
LOC_Os05g11160
Os.56929.1.S1_at--1122--6491Chr05:6271795..6271819 (25 bp)
GATATACCACCGCTGGCGTTGCTGC
LOC_Os05g11160
Os.56929.1.S1_at--90--4391Chr05:6271748..6271772 (25 bp)
CCAAGCTCTAGCATGCGCGCGGCGG
LOC_Os05g11160
Os.56929.1.S1_at--1138--4071Chr05:6271723..6271747 (25 bp)
CGACGTGGCGTGAGCTTGTACGTTC
LOC_Os05g11160
Os.56929.1.S1_at--1066--5911Chr05:6271712..6271736 (25 bp)
GAGCTTGTACGTTCGATTGTGTTGT
LOC_Os05g11160
Os.56929.1.S1_at--294--4691Chr05:6271660..6271684 (25 bp)
GCGGATGCAGCGGAGGATTCTACAT
LOC_Os05g11160
Os.56929.1.S1_at--997--1611Chr05:6271652..6271676 (25 bp)
AGCGGAGGATTCTACATACTTGGCA
LOC_Os05g11160
Os.56929.1.S1_at--308--9871Chr05:6271636..6271660 (25 bp)
TACTTGGCAGCGTATACGAGCGTTC
LOC_Os05g11160
Os.56929.1.S1_at--583--9931Chr05:6271622..6271646 (25 bp)
TACGAGCGTTCGTACGTACATACGT
LOC_Os05g11160
Os.56929.1.S1_at--125--1891Chr05:6271609..6271633 (25 bp)
ACGTACATACGTGCGTACACGAATT
LOC_Os05g11160
Os.56929.1.S1_at--755--4331Chr05:6271570..6271594 (25 bp)
CCATGATATTGGTGTCTGGCTACAT
LOC_Os05g11160
Target Sequence 
GTGCTCCCTAGCTAGCTCGATATACCACCGCTGGCGTTGCTGCGGCGGCGCCGTCGCCGGCGCCGCCAAGCTCTAGCATG
CGCGCGGCGGCGACGTGGCGTGAGCTTGTACGTTCGATTGTGTTGTTGCATGCATGCATGGGGCGATGGCGATGCGGATG
CAGCGGAGGATTCTACATACTTGGCAGCGTATACGAGCGTTCGTACGTACATACGTGCGTACACGAATTAAATTGTTATT
ATACCATGATATTGGTGTCTGGCTACAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.56929.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis