Browse Element(s) Details


OsAffx.14634.1.S1_x_at

Description tigr:9633.m00982
TID=OsAffx.14634.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1119011/11RPT2, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g11160Os.56929.1.S1_at11/115+6271519..6272790expressed protein
LOC_Os05g11170OsAffx.26825.1.S1_at11/115+6284942..6286013hypothetical protein
LOC_Os05g11180OsAffx.14633.1.S1_at11/115+6292298..6293874hypothetical protein
LOC_Os05g11190OsAffx.14634.1.S1_x_at11/115+6296201..6298267RPT2, putative
LOC_Os05g11200OsAffx.4298.1.S1_at9/115+6309137..6310766hypothetical protein
LOC_Os05g11210OsAffx.26826.1.S1_at11/115+6312419..6313220expressed protein
LOC_Os05g11220NANA5+6318766..6318978hypothetical protein
LOC_Os05g11230OsAffx.26827.1.S1_at10/115+6321674..6322549hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0009638biological_processphototropism
GO:0005634cellular_componentnucleus
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14634.1.S1_x_at--437--3811Chr05:6296237..6296261 (25 bp)
CTCCTCTTGTCGTTGGCCACCGTGA
LOC_Os05g11190
OsAffx.14634.1.S1_x_at--222--10811Chr05:6296243..6296263 (21 bp)
TTGTCGTTGGCCACCGTGACGCAGG
LOC_Os05g11190
OsAffx.14634.1.S1_x_at--934--4551Chr05:6297856..6297880 (25 bp)
GCCCAAGTTCGGCTACATCCGCAAG
LOC_Os05g11190
OsAffx.14634.1.S1_x_at--960--6071Chr05:6297920..6297944 (25 bp)
GAGTTTGACCTCTTCACGCTGCCCG
LOC_Os05g11190
OsAffx.14634.1.S1_x_at--767--8451Chr05:6297946..6297970 (25 bp)
TGGCGTCGATGCCTTCGACAAGGCC
LOC_Os05g11190
OsAffx.14634.1.S1_x_at--567--6331Chr05:6297953..6297977 (25 bp)
GATGCCTTCGACAAGGCCGCGCGCT
LOC_Os05g11190
OsAffx.14634.1.S1_x_at--500--2951Chr05:6297965..6297989 (25 bp)
AAGGCCGCGCGCTACTGCTACCGTG
LOC_Os05g11190
OsAffx.14634.1.S1_x_at--148--9091Chr05:6297980..6298004 (25 bp)
TGCTACCGTGCCAACTTCCAGCTAT
LOC_Os05g11190
OsAffx.14634.1.S1_x_at--749--7271Chr05:6297987..6298011 (25 bp)
GTGCCAACTTCCAGCTATCAGTGCG
LOC_Os05g11190
OsAffx.14634.1.S1_x_at--408--10691Chr05:6297995..6298019 (25 bp)
TTCCAGCTATCAGTGCGCAACGCGG
LOC_Os05g11190
OsAffx.14634.1.S1_x_at--647--651Chr05:6298052..6298076 (25 bp)
ATGCAGCCGCCGTTGGCCCGGTGGC
LOC_Os05g11190
Target Sequence 
CTCCTCTTGTCGTTGGCCACCGTGACGCAGGCGGTGATGGTGCCCAAGTTCGGCTACATCCGCAAGGCCGTCGCGGCGGC
GCGCGGTGGCATCACCACCACCGTCGAGTTTGACCTCTTCACGCTGCCCGGTGGCGTCGATGCCTTCGACAAGGCCGCGC
GCTACTGCTACCGTGCCAACTTCCAGCTATCAGTGCGCAACGCGGCCGCGCTTCTCTGCGCCTCTGCCTTCCTCGACATG
CAGCCGCCGTTGGCCCGGTGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14634.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis