Browse Element(s) Details


OsAffx.4298.1.S1_at

Description tigr:9633.m00983
TID=OsAffx.4298.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g112009/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g11170OsAffx.26825.1.S1_at11/115+6284942..6286013hypothetical protein
LOC_Os05g11180OsAffx.14633.1.S1_at11/115+6292298..6293874hypothetical protein
LOC_Os05g11190OsAffx.14634.1.S1_x_at11/115+6296201..6298267RPT2, putative
LOC_Os05g11200OsAffx.4298.1.S1_at9/115+6309137..6310766hypothetical protein
LOC_Os05g11210OsAffx.26826.1.S1_at11/115+6312419..6313220expressed protein
LOC_Os05g11220NANA5+6318766..6318978hypothetical protein
LOC_Os05g11230OsAffx.26827.1.S1_at10/115+6321674..6322549hypothetical protein
LOC_Os05g11240OsAffx.26828.1.S1_x_at11/115+6324232..6325670hypothetical protein
LOC_Os05g11240OsAffx.26828.1.S1_at11/115+6324232..6325670hypothetical protein
LOC_Os05g11250Os.56031.1.S1_at11/115+6328307..6329255expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4298.1.S1_at--732--7711Chr05:6310692..6310716 (25 bp)
GGGTGACTCAGCTAGACTGATCCTC
LOC_Os05g11200
OsAffx.4298.1.S1_at--275--5731NONE
GACTGATCCTCACCGGAGACAGGAC
NONE
OsAffx.4298.1.S1_at--315--9671NONE
TCACCGGAGACAGGACCCATTTGTT
NONE
OsAffx.4298.1.S1_at--392--8051Chr05:6309355..6309374 (20 bp)
GGAGACAGGACCCATTTGTTAGCTT
LOC_Os05g11200
OsAffx.4298.1.S1_at--1112--5631Chr05:6309352..6309374 (23 bp)
GACAGGACCCATTTGTTAGCTTATA
LOC_Os05g11200
OsAffx.4298.1.S1_at--173--8111Chr05:6309348..6309372 (25 bp)
GGACCCATTTGTTAGCTTATACTAC
LOC_Os05g11200
OsAffx.4298.1.S1_at--895--3571Chr05:6309343..6309367 (25 bp)
CATTTGTTAGCTTATACTACTCTCT
LOC_Os05g11200
OsAffx.4298.1.S1_at--533--4671Chr05:6309275..6309299 (25 bp)
GCGGGAGGCGACAATAGGAACACAT
LOC_Os05g11200
OsAffx.4298.1.S1_at--1074--3051Chr05:6309263..6309287 (25 bp)
AATAGGAACACATGGCGGCAAGGGC
LOC_Os05g11200
OsAffx.4298.1.S1_at--902--3491Chr05:6309209..6309233 (25 bp)
CATGGCGGGCAATGGCGATAGAGCA
LOC_Os05g11200
OsAffx.4298.1.S1_at--843--7651Chr05:6309180..6309204 (25 bp)
GGGATGGGAGCCACGCCAATGACAC
LOC_Os05g11200
Target Sequence 
GGGTGACTCAGCTAGACTGATCCTCACCGGAGACAGGACCCATTTGTTAGCTTATACTACTCTCTTCTTCTTCCTTCTCT
TTCTCCCTCCCTTTCTATCTTCCCTGGGGCGGGAGGCGACAATAGGAACACATGGCGGCAAGGGCGAGGTGGGGACTGAA
GGTGGCGGCAAGGGCATGGCGGGCAATGGCGATAGAGCAACGGGGGATGGGAGCCACGCCAATGACAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4298.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis