Browse Element(s) Details


Os.56031.1.S1_at

Description gb:AK109150.1
DB_XREF= gi:32994359
TID=Os.56031.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.56031 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-155-F09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-155-F09, full insert sequence.
FL= gb:AK109150.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1125011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g11200OsAffx.4298.1.S1_at9/115+6309137..6310766hypothetical protein
LOC_Os05g11210OsAffx.26826.1.S1_at11/115+6312419..6313220expressed protein
LOC_Os05g11220NANA5+6318766..6318978hypothetical protein
LOC_Os05g11230OsAffx.26827.1.S1_at10/115+6321674..6322549hypothetical protein
LOC_Os05g11240OsAffx.26828.1.S1_x_at11/115+6324232..6325670hypothetical protein
LOC_Os05g11240OsAffx.26828.1.S1_at11/115+6324232..6325670hypothetical protein
LOC_Os05g11250Os.56031.1.S1_at11/115+6328307..6329255expressed protein
LOC_Os05g11260Os.38301.2.A1_at11/115+6337424..6341719expressed protein
LOC_Os05g11260OsAffx.14635.1.S1_x_at11/115+6337424..6341719expressed protein
LOC_Os05g11260Os.38301.1.S1_s_at11/115+6337424..6341719expressed protein
LOC_Os05g11260Os.38301.1.S1_a_at11/115+6337424..6341719expressed protein
LOC_Os05g11260Os.27133.2.S1_at5/115+6337424..6341719expressed protein
LOC_Os05g11270OsAffx.20490.1.S1_at1/115+6345492..6346607transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g11280NANA5+6347217..6348704transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g11290OsAffx.30226.2.S1_x_at2/115+6351178..6352532retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g11290OsAffx.442.1.S1_x_at1/115+6351178..6352532retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g11290OsAffx.30226.2.S1_s_at1/115+6351178..6352532retrotransposon protein, putative, Ty1-copia subclass

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.56031.1.S1_at--22--971Chr05:6328807..6328831 (25 bp)
AGGACGTGGATGTCAACGCTCCGGC
LOC_Os05g11250
Os.56031.1.S1_at--586--4491Chr05:6328980..6329004 (25 bp)
GCCGTCACCGACATTGCCGTAGAAG
LOC_Os05g11250
Os.56031.1.S1_at--704--2071Chr05:6328990..6329014 (25 bp)
ACATTGCCGTAGAAGACGACGCCGC
LOC_Os05g11250
Os.56031.1.S1_at--808--4212Chr05:6329014..6329038 (25 bp)
CCGCCGCTCGCAGCTAGAAGAATAA
LOC_Os05g11250
Os.56031.1.S1_at--90--131Chr05:6329055..6329079 (25 bp)
ATTACTTTTCCTGCTTAATTAGCCT
LOC_Os05g11250
Os.56031.1.S1_at--1103--3131Chr05:6329071..6329095 (25 bp)
AATTAGCCTCTTCTAATGATTTGTT
LOC_Os05g11250
Os.56031.1.S1_at--404--7891Chr05:6329097..6329121 (25 bp)
GGTTCATCTAGATATCAAGTCACAT
LOC_Os05g11250
Os.56031.1.S1_at--234--2911Chr05:6329172..6329196 (25 bp)
AAGGTAGTGTTCGTTTGCTAGTCAA
LOC_Os05g11250
Os.56031.1.S1_at--958--4851Chr05:6329188..6329212 (25 bp)
GCTAGTCAATGTGTACGTGGACGAT
LOC_Os05g11250
Os.56031.1.S1_at--844--5591Chr05:6329216..6329240 (25 bp)
GAAATATTTTTCCATATGTGAGACT
LOC_Os05g11250
Os.56031.1.S1_at--96--791Chr05:6329231..6329255 (25 bp)
ATGTGAGACTTTTTAGGTTGCTGAC
LOC_Os05g11250
Target Sequence 
AGGACGTGGATGTCAACGCTCCGGCGCCGGCGGCCGCCGCCGCCGCAGGGTGCAAGCTCGTGTGGGCGTTCGAGTGCGAG
CCCGTGAAGGGGTGGACAAGGGACGGCTTGCTCGCCTACCTCGACGCCGCCGGCAAGGGCATGGCCGAGCGGATCGAGGC
CGCCGCCGCCGCCGCCGTCACCGACATTGCCGTAGAAGACGACGCCGCCGCCGCTCGCAGCTAGAAGAATAAATCGAGTA
AACTTTTAATTACTTTTCCTGCTTAATTAGCCTCTTCTAATGATTTGTTTGGTTCATCTAGATATCAAGTCACATTTTAT
TACTCTTTAATTCATCGTGTAAAAGTCTAAAAGAACATATATTAGAAGGTAGTGTTCGTTTGCTAGTCAATGTGTACGTG
GACGATGGTGAAATATTTTTCCATATGTGAGACTTTTTAGGTTGCTGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.56031.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis