Browse Element(s) Details


Os.38301.1.S1_s_at

Description gb:AK068507.1
DB_XREF= gi:32978525
TID=Os.38301.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.38301 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013154C12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013154C12, full insert sequence.
FL= gb:AK068507.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1126011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g11210OsAffx.26826.1.S1_at11/115+6312419..6313220expressed protein
LOC_Os05g11220NANA5+6318766..6318978hypothetical protein
LOC_Os05g11230OsAffx.26827.1.S1_at10/115+6321674..6322549hypothetical protein
LOC_Os05g11240OsAffx.26828.1.S1_x_at11/115+6324232..6325670hypothetical protein
LOC_Os05g11240OsAffx.26828.1.S1_at11/115+6324232..6325670hypothetical protein
LOC_Os05g11250Os.56031.1.S1_at11/115+6328307..6329255expressed protein
LOC_Os05g11260Os.38301.2.A1_at11/115+6337424..6341719expressed protein
LOC_Os05g11260OsAffx.14635.1.S1_x_at11/115+6337424..6341719expressed protein
LOC_Os05g11260Os.38301.1.S1_s_at11/115+6337424..6341719expressed protein
LOC_Os05g11260Os.38301.1.S1_a_at11/115+6337424..6341719expressed protein
LOC_Os05g11260Os.27133.2.S1_at5/115+6337424..6341719expressed protein
LOC_Os05g11270OsAffx.20490.1.S1_at1/115+6345492..6346607transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g11280NANA5+6347217..6348704transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g11290OsAffx.30226.2.S1_x_at2/115+6351178..6352532retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g11290OsAffx.442.1.S1_x_at1/115+6351178..6352532retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g11290OsAffx.30226.2.S1_s_at1/115+6351178..6352532retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g11300OsAffx.26829.1.S1_at11/115+6359459..6360295hypothetical protein
LOC_Os05g11310OsAffx.26830.1.S1_at11/115+6362694..6364845hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.38301.1.S1_s_at--78--10471Chr05:6340229..6340253 (25 bp)
TTACTAGACTGGATGATAACTGGAG
LOC_Os05g11260
Os.38301.1.S1_s_at--185--10811Chr05:6340196..6340220 (25 bp)
TTGTGGCTGCTAGACTGCAGTTGGA
LOC_Os05g11260
Os.38301.1.S1_s_at--42--5531Chr05:6340173..6340197 (25 bp)
GAAAAGATCGAAAATCATGTCCAGA
LOC_Os05g11260
Os.38301.1.S1_s_at--664--3491Chr05:6340158..6340182 (25 bp)
CATGTCCAGAATCATGATGCTGAGC
LOC_Os05g11260
Os.38301.1.S1_s_at--240--3291Chr05:6339978..6340002 (25 bp)
CAAAGAAGCTAGTGTTGATGGCCCT
LOC_Os05g11260
Os.38301.1.S1_s_at--1034--7391Chr05:6339967..6339991 (25 bp)
GTGTTGATGGCCCTATTTCGAAAAG
LOC_Os05g11260
Os.38301.1.S1_s_at--864--8051Chr05:6339857..6339880 (24 bp)
GGAGAGTGTATTCTGACCATCCCTT
LOC_Os05g11260
Os.38301.1.S1_s_at--805--10211Chr05:6339849..6339873 (25 bp)
TATTCTGACCATCCCTTGCAAGAAA
LOC_Os05g11260
Os.38301.1.S1_s_at--917--331Chr05:6339683..6339707 (25 bp)
ATACAGAGCCATGTTCCAAATGAGG
LOC_Os05g11260
Os.38301.1.S1_s_at--189--8651Chr05:6339483..6339507 (25 bp)
TGGGAACAACATGACTATGGGAAAC
LOC_Os05g11260
Os.38301.1.S1_s_at--416--2311Chr05:6339460..6339482 (23 bp)
AAAGGAAGGTTATTTCTGCACAGAA
LOC_Os05g11260
Target Sequence 
TTACTAGACTGGATGATAACTGGAGTGAAGATGTTGTGGCTGCTAGACTGCAGTTGGAAAAGATCGAAAATCATGTCCAG
AATCATGATGCTGAGCTTTTGGAATTGAAAGCGAAGACAAACAAGTTGGAAAAAGAACAAATGAATCAGGGAGGTTTAGA
TCGAGTATCTACAAACAAAGAAGCTAGTGTTGATGGCCCTATTTCGAAAAGGAGGAGAGTGTATTCTGACCATCCCTTGC
AAGAAATTTGTATTGCTGAGGAGGAAAACGATATGGTTCAGGAGGAAAACAATATGATGAATATACAGAGCCATGTTCCA
AATGAGGATTTGCAACCAAAAACCAAGCAATGTGTTGAAGACAAGAACAAACAAAATTGGGAACAACATGACTATGGGAA
ACAAAGGAAGGTTATTTCTGCACAGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.38301.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis