Browse Element(s) Details


OsAffx.14633.1.S1_at

Description tigr:9633.m00981
TID=OsAffx.14633.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1118011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g11160Os.56929.1.S1_at11/115+6271519..6272790expressed protein
LOC_Os05g11170OsAffx.26825.1.S1_at11/115+6284942..6286013hypothetical protein
LOC_Os05g11180OsAffx.14633.1.S1_at11/115+6292298..6293874hypothetical protein
LOC_Os05g11190OsAffx.14634.1.S1_x_at11/115+6296201..6298267RPT2, putative
LOC_Os05g11200OsAffx.4298.1.S1_at9/115+6309137..6310766hypothetical protein
LOC_Os05g11210OsAffx.26826.1.S1_at11/115+6312419..6313220expressed protein
LOC_Os05g11220NANA5+6318766..6318978hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14633.1.S1_at--870--3791Chr05:6293276..6293300 (25 bp)
CTCGCGCGGTAAATGGCAGCGACGA
LOC_Os05g11180
OsAffx.14633.1.S1_at--179--8411Chr05:6293321..6293345 (25 bp)
GGCCCTGCAAGTCGATCTCCGCGAT
LOC_Os05g11180
OsAffx.14633.1.S1_at--817--9991Chr05:6293348..6293372 (25 bp)
TAGCCGGCGCGCATGACGACGTTGG
LOC_Os05g11180
OsAffx.14633.1.S1_at--522--4291Chr05:6293387..6293411 (25 bp)
CCTCGGCCGCGAAGCAGGAGGCGAA
LOC_Os05g11180
OsAffx.14633.1.S1_at--665--1931Chr05:6293429..6293453 (25 bp)
ACGGAGAGGCTGCTCCTCTGCTCCG
LOC_Os05g11180
OsAffx.14633.1.S1_at--570--1131Chr05:6293521..6293545 (25 bp)
AGTCGCCATCCCAGAAAGGCGGAAT
LOC_Os05g11180
OsAffx.14633.1.S1_at--520--1411Chr05:6293533..6293557 (25 bp)
AGAAAGGCGGAATCCACCAGCCCAA
LOC_Os05g11180
OsAffx.14633.1.S1_at--252--911Chr05:6293537..6293561 (25 bp)
AGGCGGAATCCACCAGCCCAAGCAT
LOC_Os05g11180
OsAffx.14633.1.S1_at--648--4651Chr05:6293626..6293650 (25 bp)
GCGTCGCGGGCGGTGCAGAGGAAGA
LOC_Os05g11180
OsAffx.14633.1.S1_at--837--8391Chr05:6293671..6293695 (25 bp)
GGCGCGGACGAGGTCTGCAGCGGTG
LOC_Os05g11180
OsAffx.14633.1.S1_at--160--5751Chr05:6293745..6293769 (25 bp)
GACGGCGACGGCTGACATGCCTTTC
LOC_Os05g11180
Target Sequence 
CTCGCGCGGTAAATGGCAGCGACGACAGCGACTCCGGTCCTCGACGGCCCTGCAAGTCGATCTCCGCGATGCTAGCCGGC
GCGCATGACGACGTTGGCGGCGAGGCAGCCGCCTCGGCCGCGAAGCAGGAGGCGAAGGGCAATGGAGACGGAGACGGAGA
GGCTGCTCCTCTGCTCCGCCGACCGCAGCTCCGCTCTGACTACTCCACCCACCGCCCACCGCCCGGCGGAAGAAGCAGAG
GGAGAAGTCGCCATCCCAGAAAGGCGGAATCCACCAGCCCAAGCATCAGCGGCGGCGACCGGGGATCGAGGAGCGGGCCG
TGGAGGCAGCTGAAGCGGTGGAGGAAGGTGGCGTCGCGGGCGGTGCAGAGGAAGAGCCTGCCTGCAGGCGAGAGAGGCGC
GGACGAGGTCTGCAGCGGTGGGGAGCATAGGAGGAAGACCTCCCGGAGGAGGTCGTTGGTCAGCGCGGCGACGGCGACGG
CTGACATGCCTTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14633.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis