Browse Element(s) Details


Os.6327.1.S1_at

Description gb:AK102815.1
DB_XREF= gi:32988024
TID=Os.6327.1
CNT=12
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.6327 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033108M09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033108M09, full insert sequence.
FL= gb:AK102815.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3212011/11Ubiquinol-cytochrome c reductase iron-sulfur subunit, mitochondrial precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g32080Os.55336.1.S1_at9/112+18950650..18951478expressed protein
LOC_Os02g32090OsAffx.20387.1.S1_x_at2/112+18955010..18960748retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g32100NANA2+18961663..18964570retrotransposon protein, putative, unclassified
LOC_Os02g32110Os.8923.1.A1_s_at11/112+18966946..18970500exostosin family protein, putative, expressed
LOC_Os02g32110Os.8923.1.A1_at11/112+18966946..18970500exostosin family protein, putative, expressed
LOC_Os02g32120Os.6327.1.S1_at11/112+18974997..18978323Ubiquinol-cytochrome c reductase iron-sulfur subunit, mitochondrial precursor, putative, expressed
LOC_Os02g32130NANA2+18979121..18979324hypothetical protein
LOC_Os02g32140OsAffx.2825.1.S1_x_at1/112+18981231..18982637AP2 domain containing protein, expressed
LOC_Os02g32150OsAffx.12315.1.S1_at11/112+18985087..18985701hypothetical protein
LOC_Os02g32160Os.8647.1.S1_at11/112+18988145..18995211Copine family protein, expressed
LOC_Os02g32170OsAffx.30613.3.S1_x_at11/112+18996130..18998481hAT family dimerisation domain containing protein
LOC_Os02g32170OsAffx.30613.3.S1_at11/112+18996130..18998481hAT family dimerisation domain containing protein
LOC_Os02g32170OsAffx.30613.1.S1_x_at11/112+18996130..18998481hAT family dimerisation domain containing protein
LOC_Os02g32180OsAffx.12316.1.S1_at10/112+19002248..19006431hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0005739cellular_componentmitochondrion
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6327.1.S1_at--746--4631Chr02:18975564..18975588 (25 bp)
GCGTTGACATTGGATCTCTTCGTGA
LOC_Os02g32120
Os.6327.1.S1_at--222--10611Chr02:18975546..18975570 (25 bp)
TTCGTGACCCACAGCAGGATGCGGA
LOC_Os02g32120
Os.6327.1.S1_at--856--7471Chr02:18975484..18975508 (25 bp)
GTGTGTACTCATCTGGGCTGCATTC
LOC_Os02g32120
Os.6327.1.S1_at--158--7851Chr02:18975391..18975415 (25 bp)
GGTAGAATCCGTAAGGGCCCTGCAC
LOC_Os02g32120
Os.6327.1.S1_at--787--9251Chr02:18975351..18975375 (25 bp)
TCCCGACCTACTCATTTCTGGAAGA
LOC_Os02g32120
Os.6327.1.S1_at--558--491Chr02:18975313..18975337 (25 bp)
ATCGGCTGAGATTACATTGACCACA
LOC_Os02g32120
Os.6327.1.S1_at--272--3071Chr02:18975280..18975304 (25 bp)
AATCTTATGGCACTTCTATTCTCTG
LOC_Os02g32120
Os.6327.1.S1_at--806--111Chr02:18975263..18975287 (25 bp)
ATTCTCTGTTGGTTTGACGTTTCAC
LOC_Os02g32120
Os.6327.1.S1_at--1121--5751Chr02:18975248..18975272 (25 bp)
GACGTTTCACCTTTTTGTTGCTCTA
LOC_Os02g32120
Os.6327.1.S1_at--524--691Chr02:18975194..18975218 (25 bp)
ATGAGCTGCTACTTGGCTACTGTTA
LOC_Os02g32120
Os.6327.1.S1_at--856--31Chr02:18975116..18975140 (25 bp)
ATTGTCTTACAAGCTGGCACAGTGA
LOC_Os02g32120
Target Sequence 
GCGTTGACATTGGATCTCTTCGTGACCCACAGCAGGATGCGGAACGAGTCAAGAACCCTGAGTGGCTGNTTGTGATTGGG
GTGTGTACTCATCTGGGCTGCATTCCACTTCCCNACGCTGGTGACTTTGGTGGCTGGTTCTGTCCATGCCATGGATCACA
TTATGATATATCAGGTAGAATCCGTAAGGGCCCTGCACCATACAACCTCGAAGTCCCGACCTACTCATTTCTGGAAGAGA
ACAAATTGCTCATCGGCTGAGATTACATTGACCACAGGGTTTAAAATCTTATGGCACTTCTATTCTCTGTTGGTTTGACG
TTTCACCTTTTTGTTGCTCTACTTTGTTGGNCACCTTCTAGTAAAGAATAATGAGCTGCTACTTGGCTACTGTTAATTAA
TTTCCAAGTTTGGTTCTGTTACCTGAAATCAATAGGAGTTATCTTGTAATTGTCTTACAAGCTGGCACAGTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6327.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis