Browse Element(s) Details


Os.6384.1.S1_at

Description gb:AK068145.1
DB_XREF= gi:32978163
TID=Os.6384.1
CNT=13
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.6384 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013134J07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013134J07, full insert sequence.
FL= gb:AK068145.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1346011/11SET domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g13440Os.21284.1.S1_at11/1112+7518150..7532498Phosphatidylinositol-4-phosphate 5-Kinase family protein, expressed
LOC_Os12g13440Os.21284.2.S1_x_at10/1112+7518150..7532498Phosphatidylinositol-4-phosphate 5-Kinase family protein, expressed
LOC_Os12g13450NANA12+7536903..7538444retrotransposon protein, putative, unclassified
LOC_Os12g13460Os.6384.1.S1_at11/1112+7543984..7551701SET domain containing protein, expressed
LOC_Os12g13470OsAffx.19648.1.S1_at11/1112+7559304..7560177hypothetical protein
LOC_Os12g13480NANA12+7563232..7563670hypothetical protein
LOC_Os12g13490OsAffx.18377.1.S1_at4/1112+7571977..7574844hypothetical protein
LOC_Os12g13490OsAffx.18377.1.S1_x_at3/1112+7571977..7574844hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0030785molecular_function[ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6384.1.S1_at--241--5331Chr12:7548319..7548343 (25 bp)
GAAGTCGCTACTAGGCTTGTAAGAT
LOC_Os12g13460
Os.6384.1.S1_at--781--6631Chr12:7548365..7548389 (25 bp)
GTTGTCTCCAGGCTGCTAATGAGTT
LOC_Os12g13460
Os.6384.1.S1_at--462--6531Chr12:7548397..7548421 (25 bp)
GATTTGCCTGACCACACTGTGTCAC
LOC_Os12g13460
Os.6384.1.S1_at--130--131Chr12:7548597..7548621 (25 bp)
ATTCTTGCAACATGGGTGTCACTTC
LOC_Os12g13460
Os.6384.1.S1_at--477--7751Chr12:7548611..7548635 (25 bp)
GGTGTCACTTCTAATGGTGTTCTCA
LOC_Os12g13460
Os.6384.1.S1_at--439--8991Chr12:7551343..7551367 (25 bp)
TGAAGCCTGGCTGACGGGTGTAATA
LOC_Os12g13460
Os.6384.1.S1_at--727--7071Chr12:7551362..7551386 (25 bp)
GTAATAGGGATTTCACTGCCCGCAT
LOC_Os12g13460
Os.6384.1.S1_at--45--591Chr12:7551503..7551527 (25 bp)
ATGCCAATGTACATGTTCAGTCTCA
LOC_Os12g13460
Os.6384.1.S1_at--289--7751Chr12:7551564..7551588 (25 bp)
GGTGTTGGCATGATTTCCGCCGTTC
LOC_Os12g13460
Os.6384.1.S1_at--1039--871Chr12:7551596..7551620 (25 bp)
ATGGCCTGTTTGATTTTTAGCTGTC
LOC_Os12g13460
Os.6384.1.S1_at--639--2491Chr12:7551647..7551671 (25 bp)
AACAGTTTACTGTGATGGCTGCCAA
LOC_Os12g13460
Target Sequence 
GAAGTCGCTACTAGGCTTGTAAGATTGGAGAAGAAATTGTTGCATGGTTGTCTCCAGGCTGCTAATGAGTTCATAAATGA
TTTGCCTGACCACACTGTGTCACCTTGCCCTGCTCCATTTGCTCCTGNAATTGAAATAAGAAAAGTAAAGCATGCAGCGA
GCATTAATTCTTGCAACATGGGTGTCACTTCTAATGGTGTTCTCATTAATGATCACATCCAGTTGAAGTGCATTAGAAGG
AAATCTGAAGCCTGGCTGACGGGTGTAATAGGGATTTCACTGCCCGCATGCAGATTTGGCGATTAGTTGCATTGCACACA
AGTGTGCACGGATGTTTTGTTAACCTAGTGGCTTTTATATTCACTGAGTAGATTCTGTACATTCTGATGATTGACTGAGA
TGGTAATGCCAATGTACATGTTCAGTCTCATTTGTCAATAGAGATTCTGTACATGTTATATTTTTGGGTGTTGGCATGAT
TTCCGCCGTTCTCTTTTCATGGCCTGTTTGATTTTTAGCTGTCTGACTACACAGCAGAGAATTGTATGCAACAGTTTACT
GTGATGGCTGCCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6384.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis