Browse Element(s) Details


OsAffx.19648.1.S1_at

Description tigr:9640.m01301
TID=OsAffx.19648.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1347011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g13450NANA12+7536903..7538444retrotransposon protein, putative, unclassified
LOC_Os12g13460Os.6384.1.S1_at11/1112+7543984..7551701SET domain containing protein, expressed
LOC_Os12g13470OsAffx.19648.1.S1_at11/1112+7559304..7560177hypothetical protein
LOC_Os12g13480NANA12+7563232..7563670hypothetical protein
LOC_Os12g13490OsAffx.18377.1.S1_at4/1112+7571977..7574844hypothetical protein
LOC_Os12g13490OsAffx.18377.1.S1_x_at3/1112+7571977..7574844hypothetical protein
LOC_Os12g13500OsAffx.19650.1.S1_at11/1112+7580100..7580585hypothetical protein
LOC_Os12g13520OsAffx.14940.1.S1_x_at1/1112+7585029..7585565hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19648.1.S1_at--519--4731Chr12:7559887..7559911 (25 bp)
GCTGTGTCGAGCTGATGTTCTGCTA
LOC_Os12g13470
OsAffx.19648.1.S1_at--4--2991Chr12:7559834..7559858 (25 bp)
AATGTGACAAGCTTGTTCCTGGCAT
LOC_Os12g13470
OsAffx.19648.1.S1_at--142--6711Chr12:7559820..7559844 (25 bp)
GTTCCTGGCATTGGCACGATTATCA
LOC_Os12g13470
OsAffx.19648.1.S1_at--915--8611Chr12:7559768..7559792 (25 bp)
TGGTGATGATTCTGACCCCTCAAAT
LOC_Os12g13470
OsAffx.19648.1.S1_at--644--2291Chr12:7559620..7559771 (25 bp)
AAATGATGTGTTTTCCAGCTGATGT
LOC_Os12g13470
OsAffx.19648.1.S1_at--517--6651Chr12:7559543..7559567 (25 bp)
GTTGATTGCTCACTATATTATTCCA
LOC_Os12g13470
OsAffx.19648.1.S1_at--806--151Chr12:7559527..7559551 (25 bp)
ATTATTCCATAAATCGCAAGGCCGA
LOC_Os12g13470
OsAffx.19648.1.S1_at--691--9791Chr12:7559484..7559508 (25 bp)
TAGACTTAAAGCAGGAGCGCTCCGT
LOC_Os12g13470
OsAffx.19648.1.S1_at--383--1291Chr12:7559469..7559493 (25 bp)
AGCGCTCCGTAAACTCAAGTCTTTG
LOC_Os12g13470
OsAffx.19648.1.S1_at--310--1711Chr12:7559361..7559385 (25 bp)
ACCACGGCTCATCGGTGGAGCCAAA
LOC_Os12g13470
OsAffx.19648.1.S1_at--308--3231Chr12:7559334..7559358 (25 bp)
CAAGATGAGGTCTCTGCGGCAGCGA
LOC_Os12g13470
Target Sequence 
GCTGTGTCGAGCTGATGTTCTGCTAAATGCATACGGCAAGATGCTGCGTGAGCAATGTGACAAGCTTGTTCCTGGCATTG
GCACGATTATCAAGGATCACGCGAAGTATGCAAATGTTATGGTGATGATTCTGACCCCTCAAATGATGTGTTTTCCAGCT
GATGTGGTACGAAAGATAGAGGAGGCAGATGCTGCGGCAGATGATGCACGGGAAAAAGTTGATTGCTCACTATATTATTC
CATAAATCGCAAGGCCGATAAACTTGAAGAACTCTCTAGACTTAAAGCAGGAGCGCTCCGTAAACTCAAGTCTTTGGTTT
GTGATTGTTCTGGAGGGCAAAAGAGGAGCCTCACAGAAGTAGATGATGGCGTTCTTGGGAAGAAGAAAGTGAAGGGGACA
CCACGGCTCATCGGTGGAGCCAAAGCCAAGATGAGGTCTCTGCGGCAGCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19648.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis