Browse Element(s) Details


Os.6389.1.S1_at

Description gb:AU165804
DB_XREF= gi:11565168
DB_XREF=AU165804
CLONE=E12044
TID=Os.6389.1
CNT=5
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.6389 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0011G08.19 (P0011G08.19), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0631011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g06270Os.19218.1.S1_x_at11/111+2967932..2976115expressed protein
LOC_Os01g06270Os.37997.1.S1_s_at11/111+2967932..2976115expressed protein
LOC_Os01g06270OsAffx.10936.1.S1_x_at10/111+2967932..2976115expressed protein
LOC_Os01g06280Os.33613.1.S1_at11/111+2979344..2982962Protein kinase domain containing protein, expressed
LOC_Os01g06290Os.18216.2.S1_x_at11/111+2983116..2986082RNA recognition motif family protein, expressed
LOC_Os01g06290Os.18216.1.S1_at10/111+2983116..2986082RNA recognition motif family protein, expressed
LOC_Os01g06300Os.14919.1.S1_at3/111+2988199..2994119transposon protein, putative, Mutator sub-class
LOC_Os01g06300OsAffx.29313.1.S1_at1/111+2988199..2994119transposon protein, putative, Mutator sub-class
LOC_Os01g06310Os.6389.1.S1_at11/111+2996395..2997985expressed protein
LOC_Os01g06320Os.31652.1.S1_at11/111+3000662..3002530myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os01g06320Os.31652.2.S1_x_at10/111+3000662..3002530myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os01g06330NANA1+3007213..3008966hypothetical protein
LOC_Os01g06340Os.31008.1.S1_at11/111+3010717..3011553expressed protein
LOC_Os01g06350NANA1+3012647..3013219hypothetical protein
LOC_Os01g06360Os.38172.1.S1_x_at5/111+3013666..3018286transposon protein, putative, unclassified
LOC_Os01g06360Os.43567.1.S1_x_at2/111+3013666..3018286transposon protein, putative, unclassified
LOC_Os01g06370OsAffx.10555.1.S1_at11/111+3022632..3023192hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6389.1.S1_at--380--2171Chr01:2997131..2997155 (25 bp)
ACACGGGTACGAGCAAGGCTACGGC
LOC_Os01g06310
Os.6389.1.S1_at--205--4431Chr01:2997248..2997272 (25 bp)
GCACGGTTACGTGCCGGGAGCCTAC
LOC_Os01g06310
Os.6389.1.S1_at--185--2611Chr01:2997279..2997641 (25 bp)
AACGCCGCGCCACATGGAGGGCACA
LOC_Os01g06310
Os.6389.1.S1_at--714--6131Chr01:2997634..2997657 (24 bp)
GAGGGCACATGGGATCGTACCACAC
LOC_Os01g06310
Os.6389.1.S1_at--806--2851Chr01:2997731..2997755 (25 bp)
AAGTGAAGCGGCTAGCTAGCTCTAC
LOC_Os01g06310
Os.6389.1.S1_at--85--4871Chr01:2997741..2997765 (25 bp)
GCTAGCTAGCTCTACGTACACTATA
LOC_Os01g06310
Os.6389.1.S1_at--92--7031Chr01:2997756..2997780 (25 bp)
GTACACTATACGTGCCCACCAGCTT
LOC_Os01g06310
Os.6389.1.S1_at--102--4551Chr01:2997784..2997808 (25 bp)
GCCCTGCTACACCTACGTATAATAT
LOC_Os01g06310
Os.6389.1.S1_at--595--6891Chr01:2997823..2997847 (25 bp)
GTATCAACCATGTGGCGTACGCGTA
LOC_Os01g06310
Os.6389.1.S1_at--744--711Chr01:2997920..2997944 (25 bp)
ATGATCAGCTGATGAGTTGTGCAAA
LOC_Os01g06310
Os.6389.1.S1_at--467--2711Chr01:2997947..2997971 (25 bp)
AAGCATGTGGTGACGTATATATACT
LOC_Os01g06310
Target Sequence 
ACACGGGTACGAGCAAGGCTACGGCGGGCACGGTTACCCTCCCCACGCCGGCGCCGCCCACGGCGCGTACCCTCCTCAGC
ACGGCGCGTATCCTCCACAGCACGGCGCCTACCCCGGGCACGGTTACGTGCCGGGAGCCTACCCTTCGAACGCCGCGCCA
CATGGAGGGCACATGGGATCGTACCACACCGGCCATGGCGGCGGCGGCGGGCGTCACTACGGCGGCAAGCACAAGGGCGG
CATGTTCGGCGGCGGAAAGTGGAAGTGAAGCGGCTAGCTAGCTCTACGTACACTATACGTGCCCACCAGCTTTCTGCCCT
GCTACACCTACGTATAATATCTGCNCGAGTATGAGTATCAACCATGTGGCGTACGCGTATATATACATNCCTAATTAAGA
AATAAATAAAGTGCATGCAGGCAGACNGNTCTGTGTGTATACATGAGCTTAATGATCAGCTGATGAGTTGTGCAAATTAA
GCATGTGGTGACGTATATATACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6389.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis