Browse Element(s) Details


Os.6398.1.S1_at

Description gb:AK105958.1
DB_XREF= gi:32991167
TID=Os.6398.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.6398 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-205-D09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-205-D09, full insert sequence.
FL= gb:AK105958.1 gb:AK111925.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5675011/11Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g56720Os.18550.1.S1_at11/114+33603380..33609512Regulator of chromosome condensation family protein, expressed
LOC_Os04g56730Os.4682.1.S1_a_at11/114+33609877..33613506Repressor of RNA polymerase III transcription MAF1 homolog, putative, expressed
LOC_Os04g56740Os.5514.1.S1_at11/114+33620948..33626839IQ calmodulin-binding motif family protein, expressed
LOC_Os04g56750Os.6398.1.S1_at11/114+33629552..33634920Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os04g56760OsAffx.4196.1.S1_s_at11/114+33635333..33637490PHD finger-like domain protein 5A, putative, expressed
LOC_Os04g56770OsAffx.14441.1.S1_at10/114+33637664..33639994hypothetical protein
LOC_Os04g56780OsAffx.26640.1.S1_at11/114+33641309..33642359Homeobox domain containing protein
LOC_Os04g56790Os.15045.1.S1_at11/114+33650009..33653836TLD family protein, expressed
LOC_Os04g56800OsAffx.4197.1.S1_x_at10/114+33654393..33657050Peptidyl-prolyl cis-trans isomerase 1, putative, expressed
LOC_Os04g56810OsAffx.14442.1.S1_at11/114+33658435..33658926hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0003676molecular_functionnucleic acid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6398.1.S1_at--577--1191Chr04:33629994..33630018 (25 bp)
AGTTTGGTATGTACCGCCAACCTGG
LOC_Os04g56750
Os.6398.1.S1_at--1057--3891Chr04:33629973..33629997 (25 bp)
CTGGTCCTCCACAAAATGGCGGTAT
LOC_Os04g56750
Os.6398.1.S1_at--704--10231Chr04:33629951..33629975 (25 bp)
TATTGATGCCATGAACGGTGCTGCT
LOC_Os04g56750
Os.6398.1.S1_at--314--7471Chr04:33629885..33629909 (25 bp)
GTGTGCATACTTTAACAGCCCGAAG
LOC_Os04g56750
Os.6398.1.S1_at--801--7311Chr04:33629847..33629871 (25 bp)
GTGCTAGTTGCACATTCCTACATGA
LOC_Os04g56750
Os.6398.1.S1_at--433--611Chr04:33629823..33629847 (25 bp)
ATGCGTCAGCCCCAACAAGAAAAGA
LOC_Os04g56750
Os.6398.1.S1_at--791--5411Chr04:33629731..33629755 (25 bp)
GAAGCCGCCATTTAATTTTTGACTG
LOC_Os04g56750
Os.6398.1.S1_at--510--10751Chr04:33629713..33629737 (25 bp)
TTGACTGTTCTTTGGTTCATCTATC
LOC_Os04g56750
Os.6398.1.S1_at--591--2251Chr04:33629678..33629702 (25 bp)
AAATATTACTCCGTTAGCTCTTCCA
LOC_Os04g56750
Os.6398.1.S1_at--334--9991Chr04:33629652..33629676 (25 bp)
TAGCCTCCTTTTTTATGTTCGTCGA
LOC_Os04g56750
Os.6398.1.S1_at--511--6711Chr04:33629556..33629580 (25 bp)
GTTCGAGCTCGATATCTTGTTCTGA
LOC_Os04g56750
Target Sequence 
AGTTTGGTATGTACCGCCAACCTGGTCCTCCACAAAATGGCGGTATTGATGCCATGAACGGTGCTGCTGCTATGGTGAGC
AGAGATGGCAAGGTGNGGCCGATGAAACCGTGTGCATACTTTAACAGCCCGAAGGGTTGTCGAAATGGTGCTAGTTGCAC
ATTCCTACATGATGCGTCAGCCCCAACAAGAAAAGATCATCAGAAGCAAAAGGGATCAAAAAGGATAAAATTAGACAACA
CAATGGGCGGTCGAAATTGAGCTGAAGCCGCCATTTAATTTTTGACTGTTCTTTGGTTCATCTATCATGGATCAGTAAAT
ATTACTCCGTTAGCTCTTCCATTAGCCTCCTTTTTTATGTTCGTCGAGGAGAGGAGATGTTCTGAAAGAAAGCAAAATAT
TTCATGATTGATTGGTGCTCAAATTTTTACTGAATCAAGTTCGAGCTCGATATCTTGTTCTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6398.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis